Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 167 / 3e-50 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 163 / 3e-49 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 156 / 1e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 156 / 1e-46 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 155 / 3e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 152 / 6e-45 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 144 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 142 / 1e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G42960 139 / 7e-40 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1) AT1G52340 137 / 7e-39 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010544 [exp] 446 / 2e-160 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 345 / 8e-121 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034626 [exp] 289 / 2e-98 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 281 / 3e-95 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 236 / 7e-78 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 236 / 1e-77 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 233 / 2e-76 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 224 / 5e-73 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021258 [exp] 223 / 2e-72 AT2G47140 177 / 2e-54 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206400 [exp] 222 / 6e-72 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 216 / 8e-70 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 214 / 6e-69 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 212 / 5e-68 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 208 / 1e-66 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 200 / 1e-63 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 192 / 1e-60 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 191 / 3e-60 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 183 / 6e-57 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 183 / 8e-57 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004908 pacid=23177749 polypeptide=Lus10004908 locus=Lus10004908.g ID=Lus10004908.BGIv1.0 annot-version=v1.0 ATGAGAAACAGAATAGATGGCAAGGTTGCGTTAATCACCGGGGGAGCCAGCGGGATTGGCGCCTCCACAGCAAATCTATTCGCTGAAAACGGCGCTATAG TCATGATCGCCGATGTCCAGTCCAATTTAGGTCTATCCGTCGCCGAAGAAATTCGCTCCCGCTACCCCAAAAGCCTAGCCACGTTTATCAAATGCGACGT TTCGAAAGAATCGGAAGTCGAGGCAGCGGTGGATTCCGCAATCTCCGCCCACGGGAAGCTGGACATCATGTTCAGCAACGCCGGAATCCCAGGGGACTTC ACCACGGGGAGCAAGATCGGAACATTGGAAGCAGACGATCTGAGAAGAGTGTTCGAGGTGAACGTATTCGGTTCGTTTTTCTGCGCGAAGCATGCGGCCA GAGTGATGGTGCCGAAGCAAACGGGGACGATCTTGTTTACGCTGAGTGTGGTTACCGAGGCGTACGGGTTCGGGACCCACGCGTACACGGCGTCGAAGCA TGCTTTGGTTGGGCTGATGAAGAATCTGTGTGTGGAGTTGGGGCCTTCTGGGATTCGGCTGAATTCGATTTCGCCGGCTGGGGTTCCAACGCCGATGATT ACCGGTGCGACGGGGATGGATAGCAAGGCGGTTGAGGATTTGACATCGCACAAGGCTGGGCTCAAAGGGGCGGTTTTGGATATTAATGATGTTGCTAAGG CGGTTTTGTACTTGGTCAGCGAGGAAGCCCAGTTTGTTAATGGGCTTAACCTTGTGTTAGATGGAGGCCTCAACTTCAGGACTGCCTCATAA
AA sequence Show only first row Show all	>Lus10004908 pacid=23177749 polypeptide=Lus10004908 locus=Lus10004908.g ID=Lus10004908.BGIv1.0 annot-version=v1.0 MRNRIDGKVALITGGASGIGASTANLFAENGAIVMIADVQSNLGLSVAEEIRSRYPKSLATFIKCDVSKESEVEAAVDSAISAHGKLDIMFSNAGIPGDF TTGSKIGTLEADDLRRVFEVNVFGSFFCAKHAARVMVPKQTGTILFTLSVVTEAYGFGTHAYTASKHALVGLMKNLCVELGPSGIRLNSISPAGVPTPMI TGATGMDSKAVEDLTSHKAGLKGAVLDINDVAKAVLYLVSEEAQFVNGLNLVLDGGLNFRTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10004908 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	1.0	0.9954
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	2.8	0.9819
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	4.2	0.9818
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10010544 [exp]	4.9	0.9694
					Lus10016839 [exp]	6.5	0.9761
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	10.6	0.9800
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	13.1	0.9671
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	15.7	0.9713
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	18.2	0.9779
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	19.6	0.9722

Compare expression of checked genes

Lus10004908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.