Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 371 / 3e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 337 / 2e-96 transmembrane receptors;ATP binding (.1.2) AT1G27180 337 / 1e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 318 / 2e-90 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 302 / 2e-84 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 289 / 3e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 287 / 8e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 289 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 287 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 283 / 1e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010574 [exp] 1724 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 1044 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 1003 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 972 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 970 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 960 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10020238 [exp] 959 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10042714 [exp] 947 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 931 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 425 / 5e-131 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 426 / 1e-129 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 417 / 2e-128 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 416 / 8e-128 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 421 / 1e-127 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 424 / 2e-127 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002300 [exp] 419 / 2e-127 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 418 / 8e-127 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 418 / 3e-126 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 417 / 3e-126 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004911 pacid=23177753 polypeptide=Lus10004911 locus=Lus10004911.g ID=Lus10004911.BGIv1.0 annot-version=v1.0 ATGAGTCATCTTCTTCTTGGTTCCGAAGCCTCTTCCTCCAACTCTTCTTCCTCTAAACCATCATCTGCACTTCCAAATGGAGATTACGAGGTTTTCCTGA GCTTTAGAGGCCCAGACGTAAGAACGAGTTTTGCTGATTGTCTCTACAGTGGGTTGATGCGCTCCAAAATCCGCACATTCAGGGACGAGGAAGAGCTTCA TAAAGGGGACAAGATTGCCTCATCCCTGGTTCAGGCAATCACTGAATCCAAAATTTACATCCCAATCTTCACAAAAAGCTATGCTTCTAGCAAATGGTGT TTGATGGAACTTGCTAAGATGGTTGAGTGTTGGAAGCGAAGTAAGGGACACATGTTCTTGCCCATTTTCTACTTTGTGGATCCTAGAGATGTTCGACATC AAGACGGCCCTTTTAAGGAATCATTCCAACACCACAACCAAAAACATGATCCAAATCTTGTACAAAAATGGAGGGAAGCTCTCCAGGATGTCGGTGAAAT GAAAGGATGGCACGTTAATGAATCGCACGGACAAGGAAGTGTAATAGATGAGATACTTTCTAAAGTTGAGTTATATCTGAGGAGAAACTGCACAATGGTC ACTGAAGAGTTGGTGGGAATTGATTCTCACTTGGAAAATGTTGGGAAGCTGTTGAAACTGGATTCTGCTGGTAGTAAAGTACTTGGTATTCATGGTATGG GTGGCATTGGCAAAACCACTACAGCTAAAGCTGTTTATGATATGGTCAAAGACCAATTTGATAAGTGCTGCTTTTTAGAGAATGCACGTTACATATTGTT GAAGGATGATGGTATTGTATCTCTGCAGAATAGGGTTATTTCTGGTGTATTGGGGCATACTTCTCCAATCAATAATGCTAGCGAAGGAATCAACATAATA AGAGACAGGGTATGCAAGTACAAAGTGTTGATAGTGCTTGATGATGTAGATGAAAGTTTCGAGTTTGATCAAGTGTTAGGGAAGCTAGACAATTTTTCAT CAGAAAGTAGATTTATAGTGACAACCAGAGACAAAAGAGTTTTGGAACTCCTCGGAGACTATGAGTTATACCAAGTGGAAGAAATGCATTATGATCATTC TCTTCAACTTTTCAGCAAGCATGCATTTAAGATGGACTATCCTCAAGATGGATACGCAATGCTGTCCCAAGAATTTGTAAAACTAGCTGGAGGTCTTCCT TTAGCACTTAAGGTTATAGGGTCTCTTTTGTTTGATCGGCATACCAAGTTCTGGGAAGAAAAGTTGATAGAATTGAGACAAGTACCTTGTAGTTGTAACA AGGTACAGGAGACCTTGAAACTGAGCTATAATGAGTTGAGTCATTCGGAAAAGCAAATCTTCCTGGATATTGCTTGCATATTTGTCGGGGAAGATAAAGA ATGGCCTTTTTATATGTGGGCAGATTGTGATTTTTATCCAGAGAGTGGGATTAGGACTCTTATCCTGAGATCATTACTAAAAATTGATGAGGAGAAATGT TTTTGGATGCACGATCATATTAGAGATCTTGGTAGGGCCATGGTTGCTGAGGAGGATATTGCAAATCCATTCAACAGAAGCAGAATATGGTCTAATTATG ATGCTGTGAACATGCTGAAACATAAGAAGGGAGCTGATCGAGTCGAAATCATGCGGGTTACTGTAGATGATATGTATAATCTCACAAATGAAGAGTTTAG GAATCTCTCTGGATTAAGGTATCTTGATTTGACATGTGGAAGTCTAACGGGAGATTTCAGTGAAATTCTTCCAAATCTACGCTGGTTTCGACTTTATTAT TATTATGGTCCAATCCCGACCAATATCAATTTCAAGAAATGCATCATTCTTGAGTTGGATCGTTGCCGAGTTACTGATGATTGGAAAGGCTGGAAAGAAA TTAAGGTGGCAGGTAAGCTGAAGGTTTTGAAGTTAAACTCATGCAGAAATCTAGAAAAAGCTCCAGACTTGTCTTCATGTAGAGGTCTAGAGGATTTACA CTTAGTGAATTGTCAAAAAATGAAAGGGCATCTAAACATCGGCAACCTGAAGAAGCTAAAAAAACTTGTTTTGTGGGACAACTGCATTACGGAGTTAAGA GGCGATATTGGCTTGCTTGAAAAACTTGAAGACATTCGTCTCACGGATCTCCGTTTAAGAGAAGCCCCTCCAGGAATCGGTAAACTATCGTCTCTCGGAA GCTTGGACATGACATCGCGATTTTGTAAGATGGAAGTAAGAGAAGATGTCCCTGCAAGCTTAAAGACACTGTCCATTTCGTGCCCAACGGTTCCAAACCT ATTGGAGCTCCAGCAGTTGGAGGACTTGCTCTTTTCCTGTTGTACTGATAAGCCTGAAATTCCAGGAGATTTATGGAAGCTACCAAAGCTGAAGACTTTA GTCATCCTTGGTTGCTCCTCCCAACACTTCACTACTCTACTGCAAGTCCCTGTTTCCCAGTCAGGATTACCTCCTCCTGTCCTCCCATCTTCTCTAAACA AGCTTAATGTTTGTTTCTGTGATCATTTGCAAACATTGCCCAATCTCGCAAATCTCAATAATCTGACAGCACTTCACCTGAAAGGGGTTATCATACGGAT GATTCCTGGTCTTGGGGAGCTAAAAATGCTAGCGACTTTGGAACTATTTCGCATACCAAACTTAGAATATTTGGATGGACTTGAAAATCTGGCAGTACTT GCAGAATTGAGAGTACAAAGCTGCGGGGTATCAGGGAAGTTCCCTAATCTGTCAAATTTGATCAAGTTAAACACCCTCGTTATCGGCGAATGTGGGCTAC TCACCGAAATCCAAGGACTGAGTCGGTCTTTAAAAAGCTTGGAAGTAAGTAACTGTCCTTGTTTATCAAATGTTGGGGACCTTGAATCTCTAGAATCGCT CCAAGTTTTGCGACTGGATAGATGTTGCATGTCAGCAAAATGGCTACCACCATCTCTCTCCAAATTCGGTAAACTGGAGGAATTAAGATATGTGGAAGAT GAGAGCCTTCCTGATCACATGTCACTGAAAGAACTTCCACATCTCCCAAAGAGTATAAAGGTGTTAAAAATTAGGTGCAATGGTTTGGAAGTGATTACAG GGCTAGATCAATTGGAGTCGATTCAGAGTTTGTTAGATGTGTCAAGGCTATGTAATTTGGAGAAGTTAGATGTTAGAGGATGCTTTCAGTTAAGTGAGGT CAGAGGGCTGGGAGGATTGGTGTCATTGCAAGAGCTAGTGATGTCGGAATGCAGTTCACTTACGGAGTTGGATCTATCTGGTCTCATGAATTTACGGAGA TTCGAAGCTGAAGGATGCACTCGACTGCGTAAGGTGAATGGGCTGGAGGAATTGGAGGCGCTACAAGTGTTGAAAATTGCTAAGAGGTTGAAATACAATG TTCTTGAAATCTGCAGCAGCATGATACGGGAAGTGACCAACTGCATTATTGGGGATGTGAGAAATTATTATGGACGGCCTTCCAAGTTCTATCTTATGTA CCTCGTGTTATTTATTTGTTGGGCTATCTGCAAAGAAGAACATAACGGGGTTTTCAGGGACATGACTAGAATGGGAAGGAAGATGATTCTGGGTTTTCTT GAGGGGGAAGTGTGA
AA sequence Show only first row Show all	>Lus10004911 pacid=23177753 polypeptide=Lus10004911 locus=Lus10004911.g ID=Lus10004911.BGIv1.0 annot-version=v1.0 MSHLLLGSEASSSNSSSSKPSSALPNGDYEVFLSFRGPDVRTSFADCLYSGLMRSKIRTFRDEEELHKGDKIASSLVQAITESKIYIPIFTKSYASSKWC LMELAKMVECWKRSKGHMFLPIFYFVDPRDVRHQDGPFKESFQHHNQKHDPNLVQKWREALQDVGEMKGWHVNESHGQGSVIDEILSKVELYLRRNCTMV TEELVGIDSHLENVGKLLKLDSAGSKVLGIHGMGGIGKTTTAKAVYDMVKDQFDKCCFLENARYILLKDDGIVSLQNRVISGVLGHTSPINNASEGINII RDRVCKYKVLIVLDDVDESFEFDQVLGKLDNFSSESRFIVTTRDKRVLELLGDYELYQVEEMHYDHSLQLFSKHAFKMDYPQDGYAMLSQEFVKLAGGLP LALKVIGSLLFDRHTKFWEEKLIELRQVPCSCNKVQETLKLSYNELSHSEKQIFLDIACIFVGEDKEWPFYMWADCDFYPESGIRTLILRSLLKIDEEKC FWMHDHIRDLGRAMVAEEDIANPFNRSRIWSNYDAVNMLKHKKGADRVEIMRVTVDDMYNLTNEEFRNLSGLRYLDLTCGSLTGDFSEILPNLRWFRLYY YYGPIPTNINFKKCIILELDRCRVTDDWKGWKEIKVAGKLKVLKLNSCRNLEKAPDLSSCRGLEDLHLVNCQKMKGHLNIGNLKKLKKLVLWDNCITELR GDIGLLEKLEDIRLTDLRLREAPPGIGKLSSLGSLDMTSRFCKMEVREDVPASLKTLSISCPTVPNLLELQQLEDLLFSCCTDKPEIPGDLWKLPKLKTL VILGCSSQHFTTLLQVPVSQSGLPPPVLPSSLNKLNVCFCDHLQTLPNLANLNNLTALHLKGVIIRMIPGLGELKMLATLELFRIPNLEYLDGLENLAVL AELRVQSCGVSGKFPNLSNLIKLNTLVIGECGLLTEIQGLSRSLKSLEVSNCPCLSNVGDLESLESLQVLRLDRCCMSAKWLPPSLSKFGKLEELRYVED ESLPDHMSLKELPHLPKSIKVLKIRCNGLEVITGLDQLESIQSLLDVSRLCNLEKLDVRGCFQLSEVRGLGGLVSLQELVMSECSSLTELDLSGLMNLRR FEAEGCTRLRKVNGLEELEALQVLKIAKRLKYNVLEICSSMIREVTNCIIGDVRNYYGRPSKFYLMYLVLFICWAICKEEHNGVFRDMTRMGRKMILGFL EGEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10004911 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	7.8	0.8396
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	11.3	0.8074
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	14.6	0.8258
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	15.4	0.8349
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	16.2	0.8205
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	17.5	0.8132
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10022263 [exp]	20.1	0.7964
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	23.7	0.7962
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	26.3	0.8060
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	27.2	0.8110

Compare expression of checked genes

Lus10004911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.