Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 410 / 9e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 404 / 3e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 84 / 1e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 81 / 1e-17 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 81 / 1e-17 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50600 79 / 1e-16 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 79 / 1e-16 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 77 / 4e-16 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 77 / 4e-16 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G55290 76 / 9e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040878 [exp] 414 / 7e-148 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 377 / 1e-132 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 359 / 1e-125 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 335 / 3e-116 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 324 / 1e-111 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 218 / 3e-70 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031448 [exp] 91 / 9e-21 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 89 / 3e-20 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 84 / 2e-18 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 450 / 1e-160 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 398 / 7e-141 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 219 / 2e-70 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 88 / 7e-20 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 83 / 3e-18 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 81 / 1e-17 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 81 / 2e-17 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.010G056100 [exp] 81 / 3e-17 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 80 / 4e-17 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 77 / 3e-16 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004925 pacid=23177764 polypeptide=Lus10004925 locus=Lus10004925.g ID=Lus10004925.BGIv1.0 annot-version=v1.0 ATGGATTCCGTCGGTAAAGAAGTAGTTCTGATCACCGGCTGCTCCGAGGGCGGCATCGGGCACGCCCTGGCCAGAGAGTTCGCCGACAACGACTGTCAGG TCGTCGCCACCAGCCGATCGGTCAACTCGATGCGAGACTTGCAGCAAGACCGCAGGTTTTACCTGCAGGAGCTCGACGTTTCGTCCGACGAAAGCGTGAA CCGGGTGGTCTCCGACGTCGTCGATAAGTACGGGAGAGTTGATGTACTGGTTAATAACGCCGGAGTTCAGTGCGTCGGTCCTCTCGCTGAAGTTCCTCTT TCTGCGGTTCAGGATACTTTCAACACCAACGTTTATGCAGTTTGCCAACTTGCACATGCAGGTTCCATGAGGATGGTTCAGGCTGTTGTCCCTCACATGA CGTCTAGGAGAAAAGGGAAAATCGTGAACCTTGGAAGCGTTACAGTGATGGGACCTACACCTTGGTCCGGGGTTTATACCGCAACTAAAGCTGCTATTCA CGCATTGACTGATACCTTAAGGCTGGAACTGAAGCCGCTGGGGATTGATGTGATCAATGTAGTTCCAGGAGCCATCAGGTCAAACATAGGAAACTCTGCA GCAGATAACTACAGTAAGATGCCGGAGTTGAAACTGTACAAGCCGTTTGAGGATGCAATCAAGCAGAGAGCACATCTCTCCCAAGGCATCAAGTCCACAC CTACCCACAAATTTGCGAAAGATACAGTAGCGGTCATTCTGAAAAAGAATCCTCCTTTGTGGTTCTCCTCTGGCCATTCCTCTACCCTCGTGGCCATCAT GCATCATTTGCCACTTTCCATCAAAGATTTCATCATCCGCCGTATTGTTAAATGTTAG
AA sequence Show only first row Show all	>Lus10004925 pacid=23177764 polypeptide=Lus10004925 locus=Lus10004925.g ID=Lus10004925.BGIv1.0 annot-version=v1.0 MDSVGKEVVLITGCSEGGIGHALAREFADNDCQVVATSRSVNSMRDLQQDRRFYLQELDVSSDESVNRVVSDVVDKYGRVDVLVNNAGVQCVGPLAEVPL SAVQDTFNTNVYAVCQLAHAGSMRMVQAVVPHMTSRRKGKIVNLGSVTVMGPTPWSGVYTATKAAIHALTDTLRLELKPLGIDVINVVPGAIRSNIGNSA ADNYSKMPELKLYKPFEDAIKQRAHLSQGIKSTPTHKFAKDTVAVILKKNPPLWFSSGHSSTLVAIMHHLPLSIKDFIIRRIVKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	0	1
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	1.7	0.8453
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	6.0	0.7971
AT2G43250			unknown protein		Lus10040469 [exp]	9.8	0.7854
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	13.1	0.7946
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	14.0	0.7528
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	15.0	0.7947
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	16.1	0.7538
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	16.1	0.7167
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Lus10032961 [exp]	16.9	0.7396
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	18.0	0.7891

Compare expression of checked genes

Lus10004925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.