Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 538 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 533 / 0 GRAS GRAS family transcription factor (.1) AT1G07520 527 / 4e-179 GRAS GRAS family transcription factor (.1) AT2G29065 498 / 2e-168 GRAS family transcription factor (.1) AT5G59450 445 / 4e-148 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 446 / 4e-147 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 424 / 2e-142 GRAS GRAS family transcription factor (.1.2.3) AT3G03450 196 / 2e-54 GRAS RGL2 RGA-like 2 (.1) AT1G50600 194 / 3e-53 GRAS SCL5 scarecrow-like 5 (.1) AT1G66350 192 / 3e-53 GRAS RGL1 RGA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001577 [exp] 1095 / 0 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 535 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 517 / 4e-174 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 499 / 6e-169 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 479 / 3e-159 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 477 / 2e-158 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 468 / 3e-158 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016519 [exp] 404 / 3e-136 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 409 / 2e-133 AT2G37650 571 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241800 [exp] 632 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 624 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032700 [exp] 573 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 520 / 2e-175 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033300 [exp] 503 / 2e-169 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 497 / 5e-167 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.006G086600 [exp] 494 / 2e-165 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 492 / 1e-164 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242000 [exp] 458 / 1e-152 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033100 [exp] 456 / 6e-152 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10004968 pacid=23174851 polypeptide=Lus10004968 locus=Lus10004968.g ID=Lus10004968.BGIv1.0 annot-version=v1.0 ATGGATCCAAACAACCCAGAATTCTCCATCTACCCAAATTACGATCTTCAGTTCTCAAACTCCTTCAACCCACCAGAAGATTTGGATCTAGCTTTCACCT TAAGCCCAGGAGGAGAATCTTTCATCTTCTCCTCCACCGACGATTCCCCTGTTTCCCATCCCAGTCCAACCACTTCTTCTGGATGGAACCACCCAGATTC ATCAGAACAACAACAACATCAACAGATTCATCATCATCATCAGAATTATTCCTCTCCGGAGGAGGATGACTCATCATCATCGTCAGACCCTGTCACCAGA TACATCAGCCAGATGCTCATGGAAGAAAACATGGAGGATATGCCGTACCTCTGTTACGACCCTCTCGCCCTCCGTGCCACCGAGATGTCCCTCTACAACG TCATCGGCGAACCGCACCCTACACCGCCATCTTTCGATCTCGACATTTCTGATTACCCTGCTCCGGAGCAGGGAAATAAAAATCCCCCAGAGTACCACTG GAATCCTCCTCCACCTCCCGTTGCCGATACTGTCGGTAACGGGATTGTGAAGGGTTCCTCTTCGTTTGAGGACATGGTGAGGGATATGTTTAGCAACGAG GATTCGGTGTTGCAGTTCAACAGAGGGTTGGAGGAAGCTAAGAAGTTCCTCCCGATTGCTCCGAATCTCGTGCTTGCCGATCTGGATGGCAGAGGAAATC ATGTCGATGAAGTTCAAAAAAGGTCCCGGAATCAGGAGCGGGGGAGTTGGGAGTTTGAGGAGGAAGAACAGAGGAACAGAAAGCAGTCGGCGGTTAGTTA CGAGGAAGAAGGGGAACTGTCGGAGATGTTCGATAAGGTGCTGCTTTTGCCGGAAGATTTAACTATGTGCGCCGCCGCCTCCGATCGACATCAACCCAAC TACTGCAACGACGAGAAATCGAAACCGCGCAACAGCAATGGAAGCCGGAGGAAACAGGGGAAGACGACAAAGGCGGCCAGGAACAAGAACGAGACTGCGG ATCTGAGAGGGTTACTGGTTCTGTGCGCGCAGGCGGTTTCGTCGAGCGATTTCAGGACGGCGAACGAGCTGCTGAAGCAAGTCCGGCGACATTCTTCCGA AACCGGCGACGGAACTCAGAGGCTGGCGCATTACTTCGCCAACGGGCTCGAAGCTCGCCTGGCCGGAAACAGTTCCGCCATTTCGCCCAATTTCTTCTAC ACGATCACTTCGGTGAGAATCTCGGCCGCCGAGATCTTGAAAGCGTACAGAACTCACCTCAATTCGTGTCCTTTCAAGAAGATGTCCATCCTATTCACCA ACAAGATGATCTACGAGGCGGCGGCGGATGCCAAGACGCTCCACGTCATCGATTTCGGAGTAATGTTCGGGTTCCAATGGCCGATTTTGATACAGTTGCT CGCTATGAGACCCAACGGTCCTCCCAAGTTGAGGATCACGGGTGTAGAGCTCCCTCAGCGGGGTTTCCGCCCCACTGAGAGGAACGAGGAAGCCGGGCGT CGCCTGACCAGGTATTGCAAACGGTTTGGTGTGCCGTTTGAGTACAACCCAATAGCCTCCCAGAACTGGGAGACCATCGGGCTGGAGGAGTTCAAAATCC GGACCGGAGAGGTGGTGGCGGTTAATTCTCTGTGCAGGTTCAAGAACCTGATGGAGGAATCGTTCGATTCCAACTCACCGCGGAACGCGGTGATGGGTCT GATTCGAAGGATGAACCCGGACATCTTTGTGCTAACGGAGATCAACGGTTCCTATAACGCTCCATTTTTCGTGACACGGTTTAGGGAAGCGTTGTTCCAT TTCTCGTCGTTGTTCGACATGTTCGAATGCACGTTGGATGGCAAGGAGGAGATGGAGCGGATGATGTTCGAGAGAGAGATTTACGGGAGGGAGGCGATGA ACGTGGTGGCCGCGGAAGGAGGCGAGAGGGTCGAGCGGCCCGAAACGTATAAGCAGTGGCAGGTCCGGAATGTGCGGGCCGGGTTTCGAGGGTTGCCGTT GAAGCAAGAGTTGATGGAGAAAGTCAGGAGTAAGATGAAGCTTTGGTATCATAAGGATTTCGTTGTGGATCAAGATGGTTGTTGGATGTTGCAAGGTTGG AAAGGCAGGATCATCTATGCGACGTCGTGTTGGGTTCCTGCTTAG
AA sequence Show only first row Show all	>Lus10004968 pacid=23174851 polypeptide=Lus10004968 locus=Lus10004968.g ID=Lus10004968.BGIv1.0 annot-version=v1.0 MDPNNPEFSIYPNYDLQFSNSFNPPEDLDLAFTLSPGGESFIFSSTDDSPVSHPSPTTSSGWNHPDSSEQQQHQQIHHHHQNYSSPEEDDSSSSSDPVTR YISQMLMEENMEDMPYLCYDPLALRATEMSLYNVIGEPHPTPPSFDLDISDYPAPEQGNKNPPEYHWNPPPPPVADTVGNGIVKGSSSFEDMVRDMFSNE DSVLQFNRGLEEAKKFLPIAPNLVLADLDGRGNHVDEVQKRSRNQERGSWEFEEEEQRNRKQSAVSYEEEGELSEMFDKVLLLPEDLTMCAAASDRHQPN YCNDEKSKPRNSNGSRRKQGKTTKAARNKNETADLRGLLVLCAQAVSSSDFRTANELLKQVRRHSSETGDGTQRLAHYFANGLEARLAGNSSAISPNFFY TITSVRISAAEILKAYRTHLNSCPFKKMSILFTNKMIYEAAADAKTLHVIDFGVMFGFQWPILIQLLAMRPNGPPKLRITGVELPQRGFRPTERNEEAGR RLTRYCKRFGVPFEYNPIASQNWETIGLEEFKIRTGEVVAVNSLCRFKNLMEESFDSNSPRNAVMGLIRRMNPDIFVLTEINGSYNAPFFVTRFREALFH FSSLFDMFECTLDGKEEMERMMFEREIYGREAMNVVAAEGGERVERPETYKQWQVRNVRAGFRGLPLKQELMEKVRSKMKLWYHKDFVVDQDGCWMLQGW KGRIIYATSCWVPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	0	1
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	1.0	0.8568
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	2.8	0.8424
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	4.5	0.8238
AT1G62422			unknown protein		Lus10029957 [exp]	7.4	0.8139
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	13.3	0.8019
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	16.3	0.8082
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	17.0	0.8110
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	17.3	0.8208
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10025337 [exp]	18.7	0.8360
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	19.1	0.8367

Compare expression of checked genes

Lus10004968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.