Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 578 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 577 / 0 FTSH3 FTSH protease 3 (.1) AT1G50250 241 / 2e-73 FTSH1 FTSH protease 1 (.1) AT5G42270 234 / 3e-71 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 228 / 1e-68 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 218 / 3e-65 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 215 / 3e-64 FTSH8 FTSH protease 8 (.1) AT5G53170 206 / 3e-60 FTSH11 FTSH protease 11 (.1) AT2G26140 196 / 1e-56 FTSH4 FTSH protease 4 (.1) AT5G58870 177 / 2e-49 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001573 [exp] 692 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 584 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10040785 [exp] 536 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10012277 [exp] 238 / 2e-74 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10004973 [exp] 244 / 2e-73 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10021824 [exp] 240 / 4e-73 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 237 / 4e-73 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 236 / 2e-71 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 219 / 1e-65 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 593 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 587 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.002G012000 [exp] 238 / 2e-72 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 237 / 3e-72 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 225 / 5e-68 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 218 / 1e-64 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 215 / 8e-64 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 199 / 1e-57 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 191 / 9e-55 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 187 / 1e-53 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10004972 pacid=23174840 polypeptide=Lus10004972 locus=Lus10004972.g ID=Lus10004972.BGIv1.0 annot-version=v1.0 ATGGATGGCTTTGCTACTACTGCTGGAGTGGTTGTGCTTGCTGGCACCAACAGACCTGATATATTAGACAAGGCTCTCTTGAGGCCCGGAAGATTTGACA GGCAAATCACCATTGATAAGCCAGATATTAAAGGCCGTGAACAGATATTCCAGATCTACTTGAAGAAACTCAAGCTTGATCAGGAACCATCATATTTCTC TGAAAGGCTTTCGGCACTCACTCCTGGATTTGCAGGAGCAGACATTGCCAATGTTTGTAACGAAGCTGCTTTGATCGCTGCAAGGAATGAAGGAAAAGAA ATCACCATGGACAACTTCGAGTCGGCTATAGACCGGGTCATAAGCAAGCTGGAACGACGCACTGTTGCTTACCACGAATCTGGCCATGCTGTGACTGGCT GGTTCCTAGAGCATGCCGAACCACTCTTGAAAGTGACCATTGTTCCTCGTGGGACCGCTGCGCTTGGATTCGCTCAGTACGTTCCTAACGAGAACCTTCT GTTGACCAAGGAGCAGCTTTTCGACATGACTTGTATGACCCTCGGTGGTCGAGCAGCTGAACAGGTCATGTTGGGAAAAATCTCAACAGGAGCCCAAAAC GACTTAGAAAAGGTGACCAAGATGACGTACGCCCAAGTCGCAGTCTACGGCTTCAGCGACAAGGTGGGTCTCCTATCTTTCCCGCAAAGAGAAGACTCGA TGGAGATGACCAAGCCGTACAGCAGCAAGACGGCAGCTCTCATTGACGGTGAAGTCCGGGAGTGGGTAGGCAAAGCGTATGAACGCACTTTACAACTCGT GGAAGAACACAAGGAGCAGGTTGCCCAGATTGCAGAGATGTTACTAGAAAAAGAAGTCCTCCACCAGGACGATCTGGCTCGGGTCCTTGGCGAGAGGCCG TTTAAGGCTGCTGAGGCCACAAATTACGATAAATTCAAGGAAGGGTTCAACAAGGTGGAAGAGAGTAAGCCGGTTGAGAGCTCAACGATCCTGGAGGAGG ATGATGATTCTACTCCTTTACCGGTTGTGCCGGCCTGA
AA sequence Show only first row Show all	>Lus10004972 pacid=23174840 polypeptide=Lus10004972 locus=Lus10004972.g ID=Lus10004972.BGIv1.0 annot-version=v1.0 MDGFATTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGREQIFQIYLKKLKLDQEPSYFSERLSALTPGFAGADIANVCNEAALIAARNEGKE ITMDNFESAIDRVISKLERRTVAYHESGHAVTGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVMLGKISTGAQN DLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSMEMTKPYSSKTAALIDGEVREWVGKAYERTLQLVEEHKEQVAQIAEMLLEKEVLHQDDLARVLGERP FKAAEATNYDKFKEGFNKVEESKPVESSTILEEDDDSTPLPVVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	2.8	0.7936
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	5.7	0.8111
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10014986 [exp]	6.9	0.7667
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	11.7	0.7493
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	13.7	0.7699
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	17.2	0.7457
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	17.7	0.7125
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	18.8	0.7496
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	19.3	0.7457
AT3G57990			unknown protein		Lus10012013 [exp]	23.2	0.7260

Compare expression of checked genes

Lus10004972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.