Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 733 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 712 / 0 FTSH3 FTSH protease 3 (.1) AT5G42270 307 / 2e-92 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 306 / 6e-92 FTSH1 FTSH protease 1 (.1) AT2G30950 301 / 4e-90 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 299 / 1e-89 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 296 / 2e-88 FTSH8 FTSH protease 8 (.1) AT5G58870 280 / 1e-81 FTSH9 FTSH protease 9 (.1) AT3G47060 280 / 3e-81 FTSH7 FTSH protease 7 (.1) AT3G02450 267 / 2e-78 cell division protein ftsH, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001573 [exp] 979 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 771 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10040785 [exp] 766 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10001572 [exp] 383 / 2e-127 AT2G44065 238 / 8e-80 Ribosomal protein L2 family (.1.2) Lus10012277 [exp] 303 / 2e-93 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 306 / 2e-91 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 302 / 3e-90 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 297 / 1e-88 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 297 / 1e-87 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 759 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 693 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.005G249200 [exp] 306 / 4e-92 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 306 / 4e-92 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 300 / 7e-90 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 300 / 1e-89 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 299 / 2e-89 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 282 / 2e-88 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.017G007700 [exp] 264 / 2e-82 AT2G44065 200 / 3e-65 Ribosomal protein L2 family (.1.2) Potri.007G142200 [exp] 262 / 2e-81 AT2G44065 197 / 4e-64 Ribosomal protein L2 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0107 [flax] [poplar] KOW PF03947 [flax] [poplar] Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10004973 pacid=23174832 polypeptide=Lus10004973 locus=Lus10004973.g ID=Lus10004973.BGIv1.0 annot-version=v1.0 ATGGCTCTATGGAGAGCTCGAACAGCTTCGTCTTCCCTCTTCAGTAGGTTCCTGCAACCTGTGAGTCGCTCCTCCGCCGCCGTAGATGGCAGCAGCAACA CTGCACACCGCTATTTCTCCATCTCCGCCGATGCAGCAGCTGATGCAAACACATTGAAGGAAACAATGAAGAGAGAGTTCCTCCACCTCGACATCAACTC GCAAACGGGGAGCAACATGCCTCTTTCATCAATGCGAATCGGCACAATAATCCACAACATCGAGATGCGACCCGGTCAAGGTGGGAAGCTGGTTCGAGCT GCGGGTACTTGTGCCAAGATCATGAAGGAGCCCACAAACAAATACTGCGTGATAAAGCTACCTTCCGGTGTGGAGAAAATTATCGATTCCAGCTGCAGGG CGACGGTAGGTGTAGTGTCGAACGCCAGCCACGGAGCTAAGAAGCTTAGGAAGGCCGGGCATAGCCGGTGGCTAGGGAGGAGACCGGTGGTTAGAGGAGT GGCTATGAATCCGGTGGATCATCCGCACGGTGGTGGTGAAGGTAAGAGCAAGAGTAGCGGTAAGTTTGGCGGAGTTTCGAGGACTCCGTGGGGGAAGCCG ACGAAATCTGGGTACAAGACTGGTCCGCTCAAGCGCAAGAAGGAAGGCTATTCGAATGGTTGCTTGCCTAGCCTATTTGGATCCACTACTGTAGAAGTGC CTACGAACTATTTACGGTTGGTCTCATCGCCCTGTCTACCTCCCTCTGACCGGTCGTCGGAGTGTTCATCTATTATTGTTATCGTTGACACTCTCAGAGT TCATTCTCACTTCCTGCTGAAGAATATATTGCGCGGTGGTTACGGCAGATCAACGATTACTGGATTGCCTGTCGGAGGTTCGAATGCTAATCGGTTAGAC GATGGAGCTGGCTTTCTGAGGAGCTATTTAACTTCTATTGGAGCTGGCAAGAGCTCCGGTTCTGCGAAGAAATCGTTCTCCAACCTCAACTTCGTTCTCG CTAACCCTAAACTTCGGCGATTCTTCTCCAGCGAAGCTCCTAAGAAGAAGAATTATGAGAACTTCTTCCCCAAAGGAAAGAAGGAAGCTCCTAAGGGGGA TGGACAGAAGGCTGACTCCAAAGATAATTCGAATGCAGATGATGAGTGGAGCTTCCAGAAGCTATTTTCGAAGCAATTCAACATGCTAACCCCTTTGCTA GTCATTGGGGTGCTTCTTTCTTCCTTCCCTTTTGGCCAGAATGAGCACCAGCAGATCAGTTTCCAAGAGTTCAAGAACGAGCTTCTTGGACCTGGTTTGG TCGATCATATCGTTGTCTCCAACAAATCAGTTGCAAAAGTTTATGTAAAGAGCGGACCACAAAGCAAAACACTTGGTGATGAAGTCCAAGGTCCTACCAC TGGTACCCCTGTTAAGGGACGTGGGGGCCAATATAAATACTACTTCAATATCGGGAGTCTAGAAGCTTTTGAGGAGAAGCTGGAGGAAGCACAAGAGGCA TTGGGGACAGACCCTCATGACTATGTACCTGTTACATATGCATCTGAGGTTGCTTGGTTCCAAGAAATAATGAGGTTTGCACCGACTTTATTGCTTTTGG GAACCATAATGTACATGGGAAGGAGAATGCAAGGTGGTATAGGCGGCCTTGGTGGTGGTGGTGGAAAAGGTGGCCGTGGTATATTCAACATAGGGAAAGC TCAGATAACCAAGGTGGACAAAAATGCTAAGAATAAGGTCTATTTCAAGGATGTTGCTGGATGTGACGAGGCAAAGCAAGAAATTATGGAGTTCGTACAT TTCCTCAAGAATCCTAAAAAGTATGAAGAGCTGGGAGCAAAAATTCCAAAAGGAGCTCTTTTAGTGGGTCCTCCGGGGACTGGGAAGACCCTTCTAGCCA AGGCAACAGCTGGGGAATCCGCAGTGCCGTTTTTATCGATTTCTGGTTCTGATTTCATGGAGATGTTTGTTGGTGTTGGTCCATCTAGAGTAAGGAACTT GTTTCAAGAAGCCAGACAGTGTGCTCCGAGTATCATATTTATTGACGAAATCGATGCAATTGGCCGGGCAAGAGGGCGTGGCGGCTTCAGCGGTGGTAAT GATGAACGAGAAAGTACCCTTAATCAGTTGTTGGTAGAAATGGATGGCTTTGCTACTACTGCTGGAGTGGTTGTGCTTGCTGGCACCAACAGACCTGATA TATTAGACAAGGCTCTCTTGAGGCCCGGAAGATTTGACAGGCAAATCACCATTGATAAGCCAGATATTAAAGGCCGTGAACAGATATTCCAGATCTACTT GAAGAAACTCAAGCTTGATCAGGAACCATCATATTTCTCTGAAAGGCTTTCGGCACTCACTCCTGGATTTGCAGGAGCAGACATTGCCAATGTTTGTAAC GAAGCTGCTTTGATCGCTGCAAGGAATGAAGGAAAAGAAATCACCATGGACAACTTCGAGTCGGCTATAGACCGGGTGATTGGTGGCTTGGAGAAGAAGA ACAGGGCAAGTCATGTTGGGAAAAATCTCAACAGGAGCCCAAAACGACTTAGAAAAGGTGACCAAGATGACGTACGCCCAAGTCGCAGTCTACGGCTTCA GCGACAAGGTGGGTCTCCTATCTTTCCCGCAAAGAGAAGACTCGATGGAGATGACCAAGCCGTACAGCAGCAAGACGGCAGACCGACACGAGTCGCAAGT CCGGGAGTGGGTAGGCAAAGCGTATGA
AA sequence Show only first row Show all	>Lus10004973 pacid=23174832 polypeptide=Lus10004973 locus=Lus10004973.g ID=Lus10004973.BGIv1.0 annot-version=v1.0 MALWRARTASSSLFSRFLQPVSRSSAAVDGSSNTAHRYFSISADAAADANTLKETMKREFLHLDINSQTGSNMPLSSMRIGTIIHNIEMRPGQGGKLVRA AGTCAKIMKEPTNKYCVIKLPSGVEKIIDSSCRATVGVVSNASHGAKKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKFGGVSRTPWGKP TKSGYKTGPLKRKKEGYSNGCLPSLFGSTTVEVPTNYLRLVSSPCLPPSDRSSECSSIIVIVDTLRVHSHFLLKNILRGGYGRSTITGLPVGGSNANRLD DGAGFLRSYLTSIGAGKSSGSAKKSFSNLNFVLANPKLRRFFSSEAPKKKNYENFFPKGKKEAPKGDGQKADSKDNSNADDEWSFQKLFSKQFNMLTPLL VIGVLLSSFPFGQNEHQQISFQEFKNELLGPGLVDHIVVSNKSVAKVYVKSGPQSKTLGDEVQGPTTGTPVKGRGGQYKYYFNIGSLEAFEEKLEEAQEA LGTDPHDYVPVTYASEVAWFQEIMRFAPTLLLLGTIMYMGRRMQGGIGGLGGGGGKGGRGIFNIGKAQITKVDKNAKNKVYFKDVAGCDEAKQEIMEFVH FLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGN DERESTLNQLLVEMDGFATTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGREQIFQIYLKKLKLDQEPSYFSERLSALTPGFAGADIANVCN EAALIAARNEGKEITMDNFESAIDRVIGGLEKKNRASHVGKNLNRSPKRLRKGDQDDVRPSRSLRLQRQGGSPIFPAKRRLDGDDQAVQQQDGRPTRVAS PGVGRQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	0	1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	3.0	0.8091
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	5.3	0.8409
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	5.7	0.8349
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	6.2	0.8424
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	7.2	0.8333
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10000030 [exp]	8.9	0.8315
AT1G31780			unknown protein		Lus10035691 [exp]	12.7	0.8196
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	15.1	0.7725
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	15.2	0.8090
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	19.7	0.8270

Compare expression of checked genes

Lus10004973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.