Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29130 244 / 2e-76 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 233 / 2e-72 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 186 / 1e-54 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 175 / 1e-50 LAC10 laccase 10 (.1) AT5G58910 173 / 4e-50 LAC16 laccase 16 (.1) AT1G18140 173 / 1e-49 LAC1, ATLAC1 laccase 1 (.1) AT5G03260 172 / 3e-49 LAC11 laccase 11 (.1) AT5G05390 164 / 2e-46 LAC12 laccase 12 (.1) AT2G40370 157 / 9e-44 LAC5 laccase 5 (.1) AT5G09360 156 / 2e-43 LAC14 laccase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019122 [exp] 245 / 6e-77 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 243 / 4e-76 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 237 / 6e-74 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 228 / 4e-70 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 230 / 4e-68 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10027782 [exp] 197 / 7e-59 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 197 / 1e-58 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10028263 [exp] 195 / 8e-58 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10035517 [exp] 193 / 3e-57 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034500 [exp] 264 / 2e-84 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.009G156800 [exp] 263 / 5e-84 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 263 / 5e-84 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.001G184300 [exp] 258 / 7e-82 AT2G29130 830 / 0.0 laccase 2 (.1) Potri.001G054600 [exp] 243 / 3e-76 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 240 / 7e-75 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 239 / 2e-74 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 238 / 2e-74 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 238 / 5e-74 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.006G087100 [exp] 231 / 1e-71 AT5G60020 802 / 0.0 laccase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10004975 pacid=23174812 polypeptide=Lus10004975 locus=Lus10004975.g ID=Lus10004975.BGIv1.0 annot-version=v1.0 ATGACGGGAAATAGTAACAGTAGTAGTGTGTTGAAGCCGGTCCTCCCGGCAATCAATGACACGAATGCTGTCGCAAATTTTTCTGCCAAATTCCGCTCCT TGGGGAGTGATCGGTTTCCGGTCACTGTCCCCATACCATTGACCGGAACTTCCTGTTCACGGTCGGTCTGGGGACTAGCTCTTGCAAGAACAAGAACAAC AAAACATCATGTCAAGGCCCTAATGGGACAAGCATCAATCAACAACATATCAATGCCACTCCCTCACTCAACATCACTCCTCCAAGCACACTACACCAAG AAATCAAATGGAAATTTCTCTACTGATTTCCCTAAAATGCCCTTGAACCCATTCAACTACACAGGAAATCCTCCACCAATTAACAGTACCTTTGTGGTGA ATGGAACCAAAGTTGAGGTGCTGCCGTTTAATGCAACTGTGGAGCTCGTTTTGCAAGGGACAAGCATTCCTGGTGCTGAGAGCCACCCTATTCATCTCCA TGGCTACAATTTCTATGTGGTTGGTCAAGGATTTAGGAACTTTGATCTGACGGTGGATGTTAAGGGATACCATCTTGTTGATCCTGTTGAGAGGAACACG GTTGGTGTTCCGACCACGGGTTGGATTGCTATCCGGTTTCGAGCTGATAATCCAGGCTATTATAGTTCTGGATTCGGGAGGACCCTAGTCAAGATTCGAA AATATCCTAATCAAAGTTTAATATTTAGTTTTGGACTCGGGAGGACCCTAATCAAGATTCGAAAATACCCTGATCAAAGTTCAATATTTTGTGAAATTCA CGTAGGGAGTGTGCTGATGCATTGCCACTTCGATGCATGGATTGTTGAAGATGGGAAGCTTCCAAACCAGAAGCTACTTCCTCCACCATCTGATCTACCC AAATGCTGA
AA sequence Show only first row Show all	>Lus10004975 pacid=23174812 polypeptide=Lus10004975 locus=Lus10004975.g ID=Lus10004975.BGIv1.0 annot-version=v1.0 MTGNSNSSSVLKPVLPAINDTNAVANFSAKFRSLGSDRFPVTVPIPLTGTSCSRSVWGLALARTRTTKHHVKALMGQASINNISMPLPHSTSLLQAHYTK KSNGNFSTDFPKMPLNPFNYTGNPPPINSTFVVNGTKVEVLPFNATVELVLQGTSIPGAESHPIHLHGYNFYVVGQGFRNFDLTVDVKGYHLVDPVERNT VGVPTTGWIAIRFRADNPGYYSSGFGRTLVKIRKYPNQSLIFSFGLGRTLIKIRKYPDQSSIFCEIHVGSVLMHCHFDAWIVEDGKLPNQKLLPPPSDLP KC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Lus10004975 [exp]	0	1

Compare expression of checked genes

Lus10004975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.