Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29150 343 / 7e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 342 / 1e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 337 / 1e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07440 327 / 2e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29350 325 / 7e-113 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29360 325 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 324 / 1e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 318 / 4e-110 TRI tropinone reductase (.1) AT2G29340 317 / 2e-109 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29370 316 / 5e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004985 [exp] 451 / 1e-160 AT2G29340 322 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) Lus10040271 [exp] 325 / 1e-112 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 323 / 9e-112 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 322 / 2e-111 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 322 / 2e-111 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 321 / 7e-111 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 315 / 2e-108 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 315 / 2e-108 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 308 / 9e-106 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026000 [exp] 337 / 2e-117 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 334 / 2e-116 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 333 / 6e-116 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 326 / 3e-113 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 326 / 4e-113 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 319 / 2e-110 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 312 / 2e-107 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 301 / 3e-103 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 301 / 3e-102 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 276 / 6e-94 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004984 pacid=23174808 polypeptide=Lus10004984 locus=Lus10004984.g ID=Lus10004984.BGIv1.0 annot-version=v1.0 ATGGATTCAGAAGAAGGAGGAAGAAGATGGTCTCTCTCAGGAATGTCTGCTCTTGTCACAGGTGGAACCAAAGGGATCGGGTTTGCAATAGTTGAAGAAC TTGCAAGGCTAGGAGCAGTTGTGCACACTTGTGCAAGGAACCAAACCGAGCTCGAGAAGCACCTGCGCGATTGGAGAACAAAGGGGTTTCGAGTTACGGG TTCAGCCTGCGACCTGACCTCTCGGAAAGACCGAGAGGATCTGATCAGCACGGTTTCTGACAAGTTCGATGGCAAGCTTGACATACTTGTGAATAATGTC GGAACAAACTTGCTGAAGCCGACGGTGGAGTTCACGGAGCAGGATTTCGCGTTCCTGATGAGCACGAATCTCGAATCGGGTTATCATCTGAGCCAGCTGG CGCATCCTCTTATGAAGGCTTCAGGATCAGGGAGCATAGTTTTCTTGTCGTCTGTTGCTGCTTTGGTTCATATGGGTGCGGCTGGATCCGTTTACTTTGC AGCTAAAGGAGCGCTGAACCAACTGACGAGGAGTTTGGGATGCGAGTGGGCGAAAGACAACATCCGAGTCAACAGCGTCGCACCGGGAGGCATCGTAACT CCTCTCGCCGAACCACTTATCGAGGATCAAAGGATTGTTGAATCATTCAAAGCAAGAACACCACTGGCACGATTCGGGAAGCCAGATGAAGTATCTTCTG CAGTAGCATTCCTGTGCCTTCCAGCTGCATCTTACATCACTGGACAGATCGTTACTGTTGATGGCGGATTGTCTGTTCTTGGCTTGCCACATGATGTTTG A
AA sequence Show only first row Show all	>Lus10004984 pacid=23174808 polypeptide=Lus10004984 locus=Lus10004984.g ID=Lus10004984.BGIv1.0 annot-version=v1.0 MDSEEGGRRWSLSGMSALVTGGTKGIGFAIVEELARLGAVVHTCARNQTELEKHLRDWRTKGFRVTGSACDLTSRKDREDLISTVSDKFDGKLDILVNNV GTNLLKPTVEFTEQDFAFLMSTNLESGYHLSQLAHPLMKASGSGSIVFLSSVAALVHMGAAGSVYFAAKGALNQLTRSLGCEWAKDNIRVNSVAPGGIVT PLAEPLIEDQRIVESFKARTPLARFGKPDEVSSAVAFLCLPAASYITGQIVTVDGGLSVLGLPHDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	2.4	0.8482
AT2G27080			Late embryogenesis abundant (L...		Lus10025548 [exp]	8.2	0.7385
AT5G44700		GSO2, EDA23	GASSHO 2, EMBRYO SAC DEVELOPME...		Lus10039958 [exp]	9.4	0.7235
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	9.7	0.8416
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	10.4	0.8347
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	12.4	0.8380
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	15.8	0.8249
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	16.1	0.8131
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	18.3	0.8164
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10033585 [exp]	24.5	0.7442

Compare expression of checked genes

Lus10004984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.