Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29150 323 / 4e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 319 / 1e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 310 / 3e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29290 310 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 308 / 2e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 305 / 3e-103 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29340 303 / 2e-102 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29260 303 / 1e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 296 / 6e-100 TRI tropinone reductase (.1) AT2G29370 296 / 8e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004984 [exp] 450 / 3e-160 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 303 / 4e-102 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 298 / 4e-100 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 296 / 2e-99 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 295 / 7e-99 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 293 / 2e-98 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 292 / 9e-98 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 290 / 4e-97 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 290 / 7e-97 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 312 / 8e-106 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 305 / 2e-103 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 303 / 3e-102 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 301 / 2e-101 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 298 / 2e-100 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 293 / 2e-98 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 292 / 5e-98 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 280 / 2e-93 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 276 / 6e-91 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 263 / 6e-87 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004985 pacid=23174818 polypeptide=Lus10004985 locus=Lus10004985.g ID=Lus10004985.BGIv1.0 annot-version=v1.0 ATGGATTCAGCTGAAGAAGGAAGAAGATGGTCTCTCTCAGGAATGTCTGCTCTTGTCACAGGTGGAACCAAGGGGATTGGGTTTGCAATAGTTGAGGAAC TTGCAAGGCTAGGAGCATCCGTGCACACTTGCGCAAGGAACCAAACCGAGCTCGAGAAGTGCCTGCGCGACTGGGCCGCAAAGGGGTTTCGAGTCACAGG TTCACCCTGCGACCTGACCTCTCGGAAAGACCGAGAGGATCTGGCCAGGACTGTGTCTGCCCAGTTCGATGGCAAGCTCGACATACTTGTGAACAATGTC GGAAAGCACTTGCTGAAGCCGACGGTGGAGTTCACGGAGCAGGATTTCGCGTTCCTGATGAGCACGAATCTCGAATCGGGTTACCATCTGAGCCAGCTGG TGCATCCTCTTATGAAAGCTTTGGGTTCGGGTTGCATAATTTTCCTGTCGTCTGTTGCTGCTTTGGTCCATATGGGTGCGGCTGGATCCGTTTACTCTGC AGCTAAAGGAGCGCTGCACCAACTAACGAGGAGTTTGGGATGCGAGTGGGCGAAAGACAACATTCGAGTCAACAGCGTCGCGCCTGGATGCATCGTAACA CCTCTCGTGGAACCTCATATCCAAGATCAAAGGATCGTTGAAGCTTTTAAATCAAGAACACCCCTGGGCCGATTCGGGATGCCGAATGAAGTCTCTTCTG CAGTGGCATTCCTCTGCCTACCAGCTGCATCTTACATTACTGGACAGAACTCCGGATCCGGCAGCATCGTGTTCATATCTTCCGTCGTCGGTTCCACATC TGTGGGTTATCTATCTGTTTATGGAACAACCATAGGAGCAATCAATCAACTTACCAGAAGTTTGGCCTGTGAATGGGCGCAATACAACATCAGGACCAAC TCCGTCGCGCCTTGGTACACCAGAACTCCCGGCGTAGAGCAGGCTCTTGGACGGGAAGAATTCATGGAAGGAGTGGTGAACCAGACGCCGCTAAGGCGAA TAGCTGAGCCGGAAGAGGTGTCTGGACTTGTGGCTTTCTTATGTATGCCGGCGGCGTTTTACATTACTGGCCAGCTCATTTCCGTTGATGGTGGATTCTC TGCCAATGGCTTCTTCTTGTGA
AA sequence Show only first row Show all	>Lus10004985 pacid=23174818 polypeptide=Lus10004985 locus=Lus10004985.g ID=Lus10004985.BGIv1.0 annot-version=v1.0 MDSAEEGRRWSLSGMSALVTGGTKGIGFAIVEELARLGASVHTCARNQTELEKCLRDWAAKGFRVTGSPCDLTSRKDREDLARTVSAQFDGKLDILVNNV GKHLLKPTVEFTEQDFAFLMSTNLESGYHLSQLVHPLMKALGSGCIIFLSSVAALVHMGAAGSVYSAAKGALHQLTRSLGCEWAKDNIRVNSVAPGCIVT PLVEPHIQDQRIVEAFKSRTPLGRFGMPNEVSSAVAFLCLPAASYITGQNSGSGSIVFISSVVGSTSVGYLSVYGTTIGAINQLTRSLACEWAQYNIRTN SVAPWYTRTPGVEQALGREEFMEGVVNQTPLRRIAEPEEVSGLVAFLCMPAAFYITGQLISVDGGFSANGFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	0	1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	1.4	0.9765
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	1.7	0.9723
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	2.4	0.9758
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10013569 [exp]	4.2	0.9534
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	4.5	0.9672
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	5.9	0.9664
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	6.9	0.9652
					Lus10041251 [exp]	8.5	0.9623
AT3G25590			unknown protein		Lus10034409 [exp]	9.8	0.9462
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	10.0	0.9600

Compare expression of checked genes

Lus10004985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.