Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 310 / 9e-101 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 243 / 8e-76 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT2G28550 229 / 5e-69 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G60120 138 / 3e-35 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 131 / 2e-32 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 127 / 3e-31 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 126 / 6e-31 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 125 / 1e-30 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 123 / 2e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G54990 119 / 2e-30 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041595 [exp] 561 / 0 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 301 / 1e-96 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 301 / 2e-96 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 231 / 2e-69 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 227 / 2e-69 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 226 / 1e-67 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10023165 [exp] 224 / 3e-66 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10015055 [exp] 216 / 7e-64 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 204 / 3e-59 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046200 [exp] 334 / 2e-108 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 323 / 7e-105 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.006G132400 [exp] 239 / 2e-72 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 233 / 4e-70 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 228 / 3e-68 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 197 / 1e-56 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.001G018400 [exp] 130 / 2e-32 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 129 / 8e-32 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 129 / 2e-31 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 128 / 3e-31 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10004990 pacid=23148937 polypeptide=Lus10004990 locus=Lus10004990.g ID=Lus10004990.BGIv1.0 annot-version=v1.0 ATGTGGGACTTGAATGACTCGCCTGATCAGAAGAGAGCAGAAGACATCTCCTGTTCTTACCAGAGGACGGAAGAGGATGCTACCAACAAGTGTAAACGGG TCGGATCGGTTTCGAATTCCAGCTCATCCGCCGTCCCAACGCCCATGGACGACGGATCGGAAGAAGAAGCTGGAGCCGTGATGGATGGGAACGAGATATT CGGGTTCTCTGTAGTAGGAGGTGAGGAAGAATACGAGGAGGAAGAAGAAGAAGATGGAGAAGCTGGTGTATCGAGTCCAGTGACCAGACAATTCTTCCCG ATGGAAATGGAGGGTCCATCAGTCGGTGAGGTTGGTGGGGGGTTTCCACGGGCCCACTGGGTAGGAGTGAAGTTCTGCCAATCGGAATCTAGTACGCAAA GGCCAGTCGTCGGGGCTGGAGTGGAGATGGGGCAACAGCCGTTGAAGAAGAGCAGGCGGGGACCACGGTCAAGAAGCTCCCAGTATAGAGGAGTCACCTA CTACCGGAGAACCGGCCGCTGGGAATCCCACATATGGGATTGCAGGAAGCAAGTGTATCTGGGGGGATTTGACACTGCACATGCAGCTGCACGTGCATAT GATAGAGCAGCGATCAAGTTCAGAGGTGTGGAGGCTGACATTAACTTCAGCATTGAAGATTACCAAGACGACCTCCAACAGATGAGCAATCTGACCAAGG AGGAGTTTGTGCATGTACTTCGCCGACAAAGCACCGGTTTCCCCAGAGGGAGCTCCAAATATAGAGGAGTCACTTTGCACAAGTGTGGTCGCTGGGAAGC CCGTATGGGCCAGTTCCTCGGCAAAAAGTATGTGTACTTGGGTTTGTTTGATACTGAGGCTGAAGCTGCCAGGGCTTATGATAAGGCTGCAATTAAGTGC AACGGCAAGGATGCGGTGACCAATTTTGATCCCAGTATTTATGATGATGAATTCAACATCAACACCAACAACACCAACTACTCTCTTTCGGGTAGCAGTA ATATTAGCGCTGCCGATCACAATCTTGATCTGAGTTTAGGGAATAACATTGCTTCTTCTTCTTCTGGTATGGGACCCAATCATAGCTGCTGGCAAAATCC AGGATTATTGAGGCCTCAGCAGATGAGGCCATATGGGAGTAGTGAGAACAGTAGTAGTGAAGAAGAGCGAAGAAGAAGCAACGAGACAGAAGCAATGCAG CTACTGAGCCAAACTCACATCCGATCTCCTCCTCCTAATCACCATATGTTCCCTCCTACCCACAATTTTAATTCTTTGGATTTCCAGTTTCGGGGCGGTA ACACAGGAGGAGGAGGGAGAGTTGGGAGTGATCTTTCCTTGTCTCCAAACAATAATAATCAGCATCATCATTATCATTATCATCAACAATGGCAATTCTC AGGAGTAGGAGGAGGTTCACCTCATCCACAACAAGTACCACCACCGCCGGCGGCATCTCCTCCGGAGCATCATAATCAGATGTATGGAAGTAGTGCTGCT GCAGCATCATCAGGATTCCCTCATTACAACATTCGGACTCCAAGCAACACCAATTGTCTCCACCACAAAAATGGGTCCAATTACTCTCTCTTGAGACCCT CTTAG
AA sequence Show only first row Show all	>Lus10004990 pacid=23148937 polypeptide=Lus10004990 locus=Lus10004990.g ID=Lus10004990.BGIv1.0 annot-version=v1.0 MWDLNDSPDQKRAEDISCSYQRTEEDATNKCKRVGSVSNSSSSAVPTPMDDGSEEEAGAVMDGNEIFGFSVVGGEEEYEEEEEEDGEAGVSSPVTRQFFP MEMEGPSVGEVGGGFPRAHWVGVKFCQSESSTQRPVVGAGVEMGQQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCRKQVYLGGFDTAHAAARAY DRAAIKFRGVEADINFSIEDYQDDLQQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEAEAARAYDKAAIKC NGKDAVTNFDPSIYDDEFNINTNNTNYSLSGSSNISAADHNLDLSLGNNIASSSSGMGPNHSCWQNPGLLRPQQMRPYGSSENSSSEEERRRSNETEAMQ LLSQTHIRSPPPNHHMFPPTHNFNSLDFQFRGGNTGGGGRVGSDLSLSPNNNNQHHHYHYHQQWQFSGVGGGSPHPQQVPPPPAASPPEHHNQMYGSSAA AASSGFPHYNIRTPSNTNCLHHKNGSNYSLLRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	0	1
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	4.1	0.9309
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	4.5	0.9211
					Lus10007485 [exp]	4.9	0.9148
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	6.5	0.9237
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	9.6	0.9302
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	11.0	0.9188
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	15.2	0.9172
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	15.3	0.9201
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	15.6	0.9062
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	16.4	0.9163

Compare expression of checked genes

Lus10004990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.