Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 273 / 4e-87 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G66350 199 / 1e-58 GRAS RGL1 RGA-like 1 (.1) AT3G03450 192 / 1e-55 GRAS RGL2 RGA-like 2 (.1) AT5G17490 192 / 1e-55 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 181 / 2e-51 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 179 / 1e-50 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G04890 160 / 1e-44 GRAS SCL21 SCARECROW-like 21 (.1) AT1G63100 161 / 2e-43 GRAS GRAS family transcription factor (.1) AT1G50600 159 / 5e-43 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 157 / 3e-42 GRAS SCL1 SCARECROW-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034374 [exp] 755 / 0 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10019773 [exp] 276 / 4e-88 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 265 / 2e-84 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 262 / 1e-82 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 261 / 2e-82 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 260 / 3e-82 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10041540 [exp] 212 / 7e-62 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 211 / 5e-61 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10033583 [exp] 196 / 1e-56 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208700 [exp] 474 / 7e-167 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.001G023500 [exp] 273 / 2e-87 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 272 / 5e-87 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 269 / 1e-85 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.001G326000 [exp] 204 / 3e-59 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 198 / 4e-57 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 189 / 7e-54 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 189 / 8e-54 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 187 / 3e-53 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G122400 [exp] 185 / 3e-52 AT1G63100 696 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10005078 pacid=23171482 polypeptide=Lus10005078 locus=Lus10005078.g ID=Lus10005078.BGIv1.0 annot-version=v1.0 ATGCCATTGCAAAAGCCAGACGTGACCCTTTCCCTCACTCTACCCCCCTCCTCCGCCGCCGCACCTAGACTGAGCTCCGAGCAAAGAGGCATCCGCCTCA TCGAACTCCTCCTCAAATGCGCCACCCATGCCTCCGGAAACCTTGACCTCGTCGATGCTTGCCTCTCCGAGATATCCACTCTCGCCTCGATTTCTGGCGA TTCCATGCAGCGGTTGGCAGCTCGGTTCGCCTCTGCACTCGCCACACGCCTCCTTACCAGCCGCTGGCCTGGAATTTACACAGCCCTCAACTACACGCGC GGTCACGCACCTCCTTGTGATGTGGGCATTCAATTACGACGCCGTAGCCTCTTCTCCCAAGCTTTTCCTTACTTGAGCTTCACGTATGCCATCATAGCAC GGACCTTGCTCCAAGTCGTGACCCATGAACGTGCTGTCCACTTGGTTGATCTCGATTCGGGGGACTTGAAATTGTGGGTCCCGCTCCTGCGAAGCTTTGC CAGGCTGTCCAATGGATCTCCGCAATTGGTGATCAAGGTGACTTGTGTCTCAAGTAATGGAAGTGTGTTGGAGAAGCTAGGGCAGCAGCTCGTGAAGGAG GCGGAGGTTCTTGGACTTAGCTTCCGATTTGTTCCCTTGAAGATCGCGATGCAAGACCTTCGCCCGGGTATGATCAAGGTCGTGTCCGGGGAAGCCCTAG CGTTTATCTCTGTGTTGAACCTTCATGTTCTTCTAGCAGAAGAGGATGTCCATCAAAATGTTGATCGTCGTCCGAAATTTGGAGGGAGGCACATGGGAGA TTTTCTAGGGATGATCCGGTCAATGTCGCCCAAGGCACTGTTTGTAGTGGAGCAAGAAGCCAACCACAACTCGAACCGGTTGGTTGATCGGGTAGTGGAG GGTTTGCATTATTACAGCGCAGTGTTTGACTCGATAGACTCCACATTTGGGGTCGGGACAAGCGAGCAAGAGGACCGTACTATGATGGAGGAGATGTTTG GAGATGAGATTGAGAACATGGTGGCATGTGAAGGGGTTGAGAGGGTGGAGAGGCATGAGAAGTATTCAAAATGGGCGATGAGGATGTCCGGGGCCGGGTT TAGACCGTTTCGGATGTGGTATAACTCGGATGAAGAGGCCAAACAAATGGTGGACGCTTTTGGAAAGGCAGGGTACAAGATTGTGAATGATAGAACAAGT ATAATGATTTGTTGGCATGACCGACCCCTGTATGCTCTAACTACGTGGACTTGTTGA
AA sequence Show only first row Show all	>Lus10005078 pacid=23171482 polypeptide=Lus10005078 locus=Lus10005078.g ID=Lus10005078.BGIv1.0 annot-version=v1.0 MPLQKPDVTLSLTLPPSSAAAPRLSSEQRGIRLIELLLKCATHASGNLDLVDACLSEISTLASISGDSMQRLAARFASALATRLLTSRWPGIYTALNYTR GHAPPCDVGIQLRRRSLFSQAFPYLSFTYAIIARTLLQVVTHERAVHLVDLDSGDLKLWVPLLRSFARLSNGSPQLVIKVTCVSSNGSVLEKLGQQLVKE AEVLGLSFRFVPLKIAMQDLRPGMIKVVSGEALAFISVLNLHVLLAEEDVHQNVDRRPKFGGRHMGDFLGMIRSMSPKALFVVEQEANHNSNRLVDRVVE GLHYYSAVFDSIDSTFGVGTSEQEDRTMMEEMFGDEIENMVACEGVERVERHEKYSKWAMRMSGAGFRPFRMWYNSDEEAKQMVDAFGKAGYKIVNDRTS IMICWHDRPLYALTTWTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	0	1
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	1.4	0.9448
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	5.5	0.9173
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	6.3	0.9185
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	7.9	0.9064
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	9.0	0.9050
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	9.5	0.9096
AT1G62422			unknown protein		Lus10031521 [exp]	11.0	0.9146
AT5G19970			unknown protein		Lus10019451 [exp]	14.8	0.9120
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	15.2	0.9059
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	20.0	0.8905

Compare expression of checked genes

Lus10005078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.