Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30210 199 / 2e-63 MYB ATMYB121 myb domain protein 121 (.1) AT3G24310 183 / 1e-57 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 182 / 5e-57 MYB ATMYB79 myb domain protein 79 (.1) AT1G68320 160 / 2e-48 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G46130 157 / 1e-47 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 155 / 5e-47 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G25340 155 / 1e-46 MYB ATMYB116 myb domain protein 116 (.1.2) AT5G40350 154 / 1e-46 MYB ATMYB24 myb domain protein 24 (.1) AT3G27810 153 / 3e-46 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT1G08810 152 / 2e-45 MYB ATMYB60 myb domain protein 60 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034372 [exp] 379 / 3e-135 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10023711 [exp] 188 / 7e-59 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 185 / 1e-57 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10005886 [exp] 155 / 8e-47 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10041435 [exp] 157 / 2e-46 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 156 / 3e-46 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10033889 [exp] 153 / 2e-45 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10009037 [exp] 151 / 3e-45 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10022259 [exp] 150 / 5e-45 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115600 [exp] 217 / 1e-71 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.004G118000 [exp] 213 / 5e-70 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.017G099500 [exp] 198 / 3e-64 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Potri.008G173400 [exp] 189 / 5e-60 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.010G064000 [exp] 188 / 2e-59 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.001G346600 [exp] 152 / 1e-46 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G122100 [exp] 156 / 2e-46 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.009G027300 [exp] 154 / 2e-46 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.017G071500 [exp] 151 / 4e-46 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.019G045900 [exp] 155 / 5e-46 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005079 pacid=23171459 polypeptide=Lus10005079 locus=Lus10005079.g ID=Lus10005079.BGIv1.0 annot-version=v1.0 ATGGAAAGAATGATGATGAGGGGTTATGGGGTTGATGAGCAAGGGTGGAGGAAAGGGCCATGGGCTCCTGAAGAAGACAAGCTGCTTACTGAATATGTCA ACCTCCATGGCGAAGGAAGGTGGAGCTCTGTTTCTAAATGCACAGGACTGAAGAGGAGTGGGAAGAGCAGCAGGCTGAGGTGGGTGAATTACCTGAGGCC AGGACTGAAGAGAGGCCAACTAACACCTCAAGAGGAAGGGATAGTGATAGAACTCCATGCTATTTGGGGGAACAAGTGGTCAACTATAGCAAGTTACCTA CCCGGAAGGACCGACAATGAGATAAAGAATTATTGGAGAACTCAATTCAAGAAAAAATCTTCTTCTTCATTGCCTCACAATCCGAAACGACAAAGAAAGT CATCATCATCAGCCGTTATCAACGATCAGCAGATGATCAGTGACAGTCATGCAAACCAATCGCCCGGCCATGATAGTAGTACTATTCATGATGAGAAGAT GCAGCTGGACACACTATTATTGACCGACGACAATTGCCAGAAGCAGCAGCAATCTTGCTCGGTTCATAATATGATGAATGAGTTTGAGAAGAATCAATGG GCAGATGATCACCTGGTTCCAGCAGCAGCTTCTGGTTCTGGGACAATCATAGAGGATTGGCTGTGGAGTGGCTTGTGGAATTTCTAA
AA sequence Show only first row Show all	>Lus10005079 pacid=23171459 polypeptide=Lus10005079 locus=Lus10005079.g ID=Lus10005079.BGIv1.0 annot-version=v1.0 MERMMMRGYGVDEQGWRKGPWAPEEDKLLTEYVNLHGEGRWSSVSKCTGLKRSGKSSRLRWVNYLRPGLKRGQLTPQEEGIVIELHAIWGNKWSTIASYL PGRTDNEIKNYWRTQFKKKSSSSLPHNPKRQRKSSSSAVINDQQMISDSHANQSPGHDSSTIHDEKMQLDTLLLTDDNCQKQQQSCSVHNMMNEFEKNQW ADDHLVPAAASGSGTIIEDWLWSGLWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	1.0	0.9556
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	1.4	0.9065
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	3.5	0.8326
AT5G03050			unknown protein		Lus10030557 [exp]	7.7	0.8117
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10042071 [exp]	13.7	0.6330
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	15.5	0.8054
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	16.0	0.8054
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	16.4	0.8054
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10014724 [exp]	16.6	0.7613
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	16.9	0.8054

Compare expression of checked genes

Lus10005079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.