Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 647 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 613 / 0 Transmembrane amino acid transporter family protein (.1) AT3G56200 367 / 1e-123 Transmembrane amino acid transporter family protein (.1) AT2G40420 340 / 3e-113 Transmembrane amino acid transporter family protein (.1) AT1G80510 329 / 4e-108 Transmembrane amino acid transporter family protein (.1) AT4G38250 95 / 5e-21 Transmembrane amino acid transporter family protein (.1) AT2G42005 79 / 1e-15 Transmembrane amino acid transporter family protein (.1) AT2G41190 76 / 1e-14 Transmembrane amino acid transporter family protein (.1) AT2G39130 68 / 6e-12 Transmembrane amino acid transporter family protein (.1) AT3G54830 54 / 1e-07 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034353 [exp] 921 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 810 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 807 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 550 / 0 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 531 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 518 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 395 / 1e-134 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 391 / 4e-133 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034093 [exp] 349 / 9e-116 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 749 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 729 / 0 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 539 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 403 / 2e-137 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 365 / 2e-124 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 329 / 4e-108 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 318 / 1e-103 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 81 / 4e-18 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 83 / 6e-17 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 82 / 2e-16 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10005099 pacid=23171464 polypeptide=Lus10005099 locus=Lus10005099.g ID=Lus10005099.BGIv1.0 annot-version=v1.0 ATGACGATTGGGAACTTTGGTCCAAAGAAGGATAGGAAATCCAGGAAGGGGAAACAGCCAGTAGATGAAAATGCTCCCTTACTTCCCAAGAAGCATGAGG AGGGTAGTTTTGACGAGTTCAATGGAGCTTCTTTCTCCGGGGCTGTCTTCAATTTGTCAACCACAATTGTTGGTGCTGGGATTATGGCATTACCTGCCAC CTTGAAAGTCCTAGGCCTTATCCTTGGGATTGCCATGATCATCTTCATGGCGTTTCTTGCACAGGCTTCAGTTGACTTGCTGATTAAGTTTACCCGTGTA AGCAAGTGTTCTTCTTATGGCGGACTTATGGGGGATGCCTATGGAAAGGTTGGGAAAATAGTGCTGCAAGTTGCTGTGATGATCAACAACATAGGTGTAC TCATTGTATACATGATAATCCTTGGTGATGTGCTGTCTGGAACTAGCGCTGATGGAGTTCATCACCCTGGTGTTCTCGAAGGGTGGTTTGGAGTACAATG GTGGAATGGACGTACCTCTGTACTGCTCCTCATAACATTCGCCATATTTGCTCCCCTCGCCTCTCTTAAGCGAATCGACTCTTTAAGATATACATCAGCA CTCTCAGTTGCACTTGCAGTAGTATTCATTTTTATCACCATGGGGATTACAATTGTGAAGCTGATAAATGGAAGCATAATGATGCCCAGATTGCTCCCTG ATGTCACTAATATGGCATCATTCTGGAACCTCTTCACTATCGTTCCTGTTCTTGTCACTGCATACATCTGCCACTACAATGTTCACAGCATAGACAACGA ACTGGTGGATTCGACCCAGATAACCTCAGTGGTGCGAACATCACTTGCTCTGTGTTCATTAGTGTACATAATGACAAGTGTTTTTGGATTCCTTCTATTC GGGGATTCAACCCTGGACGCTGTGTTGTCCAACTTCAACACGGGCCTCGGCATCCCATATAGCTCACTGCTCAACGATGCAGTTCGTGTCAGCTACGCAG CTCATCTGATGCTCGTGTTCCCAGTTGTCTTCCACCCATTGCGCCTCAACTTGGACGGGCTCTTGTTCCCCTCATCAAAGCCGTTGTACCAGGACAACTG CCGGTTTGCATCCATCACCATAGCTCTCATATCCGTGATCTTCTTGGGCGCGAATTTCATCCCGAGCATCTGGGATGCTTTCCAGTTCACCGGAGCAACC GCTGCTGTTTGCCTTGGGTTCATCTTCCCAGCTGCGATTACCCTCAGAGATCGGCACTATATAGCGACATCAAAGGACAAGATGCTGTGCGTATTCATGA TTGTGCTAGCGGTGTTTGCGAATGCTGTGGCCATATACAGCGACGCGTATGCATTGATTAAGAGGAACTCGTCGCCTATCGTTGGATGA
AA sequence Show only first row Show all	>Lus10005099 pacid=23171464 polypeptide=Lus10005099 locus=Lus10005099.g ID=Lus10005099.BGIv1.0 annot-version=v1.0 MTIGNFGPKKDRKSRKGKQPVDENAPLLPKKHEEGSFDEFNGASFSGAVFNLSTTIVGAGIMALPATLKVLGLILGIAMIIFMAFLAQASVDLLIKFTRV SKCSSYGGLMGDAYGKVGKIVLQVAVMINNIGVLIVYMIILGDVLSGTSADGVHHPGVLEGWFGVQWWNGRTSVLLLITFAIFAPLASLKRIDSLRYTSA LSVALAVVFIFITMGITIVKLINGSIMMPRLLPDVTNMASFWNLFTIVPVLVTAYICHYNVHSIDNELVDSTQITSVVRTSLALCSLVYIMTSVFGFLLF GDSTLDAVLSNFNTGLGIPYSSLLNDAVRVSYAAHLMLVFPVVFHPLRLNLDGLLFPSSKPLYQDNCRFASITIALISVIFLGANFIPSIWDAFQFTGAT AAVCLGFIFPAAITLRDRHYIATSKDKMLCVFMIVLAVFANAVAIYSDAYALIKRNSSPIVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10005099 [exp]	0	1
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	9.4	0.8782
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10015513 [exp]	9.6	0.8526
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	14.6	0.8579
AT3G14280			unknown protein		Lus10003937 [exp]	21.0	0.8404
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	21.5	0.8182
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	33.5	0.8142
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	54.5	0.8253
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	54.8	0.8164
AT1G71710			DNAse I-like superfamily prote...		Lus10028697 [exp]	77.0	0.8023
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	79.4	0.8231

Compare expression of checked genes

Lus10005099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.