Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 560 / 1e-179 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 464 / 4e-142 transmembrane receptors;ATP binding (.1.2) AT1G27180 430 / 2e-128 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 390 / 1e-115 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 367 / 5e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 356 / 2e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 358 / 2e-105 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 352 / 7e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17970 341 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 350 / 6e-102 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011741 [exp] 953 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 574 / 0 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 563 / 2e-180 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 559 / 1e-177 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 468 / 1e-144 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 451 / 1e-139 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 446 / 3e-136 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 418 / 2e-124 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 415 / 2e-124 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099700 [exp] 1036 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G028750 [exp] 942 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 782 / 0 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 711 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 704 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 699 / 0 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 696 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 687 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 679 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 667 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005171 pacid=23163369 polypeptide=Lus10005171 locus=Lus10005171.g ID=Lus10005171.BGIv1.0 annot-version=v1.0 ATGGCTGCGTCTGCTTCCTCTTCTTCCCGGCACAGGTATCACGTCTTCCTCAGTTTCAGAGGTGGAGACACACGAAAGAACTTCACAGACCACCTCTACG TTGCTCTGATGAAGGCCGGAATCAACACCTTCAGAGACGACGACGCAATTGAGAGAGGCTCGCACATTGAATCGGAAATCAACACCGCTATTCTTGAGTC CAGAAGCTCCATCGTCGTGCTCTCTAATGACTATGCCTCTTCCAGATATTGTCTCGACGAGCTCCGTCTCATCATGAAACTTAGGAGAACTGTTGGCCAT ATTGTCCTACCCGTTTTCTACGATGTAGATAAGGACGTGGTCCGAAATCAGACTGGCAGCTACGGTGAAGCATTTTCCCGCCACTTGGTTGATTTTGGTG AAGCTGATATGGCGATGGTTCAAGAGTGGAAGACAGCACTTACTGACATTGCTGCCGCTGGAGATTTGGTTCTTCGTGATGGCTATGAGTCTCGATTTAC TCAACAAATTGTCGCAGAGATTGCCAGGAAACTGAACCGAACCGTGCTGACTGTTGATCCTTATTTGGTGGGCATAGATGATCGTATAGCTGATATTAAC TCCTGGCTCCAAGATGGATCAAACAGTGTTGGCATTGCCACAGTCTATGGGGTTGGTGGAATTGGGAAGACAACCATAGCCAAGACGGTTTACAACCAGA ACTTTGACAAATTTGAATCTGGAAGCTTCCTAGAGGGTGTGAGAGAAGCGTCTGAGGAACCGCAGGGTTTGGTTCGCTTGCAGAAGCAGCTGGTTTCGGA TCTCCTTAAGACGAAAGCTAAGATTTATAGCGTTGATGAAGGGACGGTGAAGATCAGAAATGCAATTTCTCGTAAAAGAGTTCTTCTTGTTCTTGATGAT GTTGATGGGATGGACCAGTTCCGAGCAATAATTGGAATGAGAGAGTGGCTTCATCCAGGGAGCAAAGTTGTCATAACAACTAGATACGAGACTTTGCTGA AAGCTCATGAAGTTAGCCGAATTTTTGGAGTTACTGCTCTTAATTTAGATGAATCACTGAAGTTGTTCAGCTGGCATGCATTTCAACAAGATCAGCCAAT TGAAGGCTTTATGGAGCTCTCTGAAAATGCAGTTGAGTTTTGCATTGGGCTGCCATTAGCTCTCCAAGTTCTGGGCTCATCTTTGTCAGGGAGAAGTTTG GATGTGTGGGAGAACGAAATACAGAAGGTTAACGCAGTTCCTGACAGTAAAATTCAGTACATTCTCAAAGTAAGCTATGATTCTCTTGATGATGATCATG ATAAAAGCGTGTTTCTTGATATTGCTTGCTTCTTTACTGGGAAGGACAAAGATTACGTAACTTACATACTTGATGGATGTGGTATCTATTCTGTTGTCGC GATTCACAATCTTATGATTAGGTGTCTTGTAAAAGTCAATGACGAAAATAAGCTGCTGATGCACCAAATGCTGAGAGACATGGGGAGAGAGATTGTTCGC CAAGAATCACCTGAGGATCCTGGGAAACGTAGTAGATTATGGCGTCACAAGGATTCATTTTCTGTACTGACTGAGAATCAGGGTACAGAAAGTGTCAAGG GCCTCAACCTCAACTTACTGGTGTTAAAGGGTGGCAATTTTGGTGGACATTCTGAGAAGCAAATCCAAATTGCAAATGCTGTTGCCCAATCAGTGGTACC TTTCCAAGGATACTATCCAAAGCTTAGAAACCTAGGCGTCTTTTCGCGGAAAGCTAATGCTTCTGGTAGTTTGATTGAAAAAATAATCCTTAAGCCAAAG GCATTTGCTAAGATGGAAAAGCTGAAATTGCTCCAACTTAATTACGTAAAAGTTAATGGGGACTATGACGAGTTTCCTAAAAGCTTAGTATGGTTATTCT GGCGTGGATTTTCCTTGAAATACATACCAGATGACTTTGACCTGGGCAAACTTGTGGCTCTTGACATACGTAACAGTAGGCTGGTAAACCTTTGGAAAGC AACACGGTTTCTTGTAAAACTGAAGTTGCTCAACCTCAGTCATAACCATGGCCTTGTTAAGACCCCTGACTTCCGAGGACTTCCCTCTCTCGAAACACTG AAGGTGAAAGATTGTGTGAAATTGGTTGAAATTGATGAATCCATCGGAACCCTTAAGAAGCTTGTGTCTCTCAATCTAAAGCAATGTATAAACTTGAAGA AGCTACCAAACACAATAAGTTCATTGAAAGCTCTCAAGAAACTCAACATATCAGGCTGCTCGAAACTGTACCAGCTTCCTAGAGAGTTGGGGGAATTGGA GTCGTTGAAGATCCTTTATGCAGATGGAATTGGAGTTAAGCAACTCCCGGATGATTCAAAAGGCCCTTGGTATTCTACATTGGTGTCCCGAATATTGCCT ACAAAGACTCCACGCTCAATCGACTATTCGCTGGCGGTTTTTCCATCCTATTTGTTGGAGTTGAGTCTCGCAGATTGCAACTTGTCGGATGGGTCTCTAC CTGGTGATCTAAGCTGCCTCTATTCGTTGCAAAATTTGGACCTGAGGGGAAACCCAATCAGCTCACTTCCTGGAAGCATCGACAAGCTGACCTCACTTGC ATCGCTCAACTTAGACCGGTGCGAAAGTCTGCAATCACTACCAAAGCTACCTCCAAATTTAGAAGAATTGAAAGCTGAAGGCTGTTCATCACTCAAGAGG ATTGCCAATCTGCCAAACTTGCTCTTATCATTGCAGGTGGAACTTTTTGGTTGTAGCGAGCTAGCCGAAGTGGATGGCTTGTTCAAGTTGGTGCCAGTGA TAAATGTTGACGTTGAAACGTTGCATGAACTTGGCTTGTTCAATATGGAACCAATACAGAACATTGAGATGACAATGTTCAATTCCATAGCAAACAGAGA AAGGCAGACTTCTCCTCAGGTACTGTATGAATGTGGTATATCCAGCACTTTCCTTCCAGCAAGTAAGGTTCCTGACTGGGTGAGCGATGCAACCATAGGG TCTTCACACTTCATACAAGTCACTTCACCGCCCAGCCCAAAACACAAAATCCGCGGCATAAGTTTATGCGTTGTATATGCACGTGATCAGGAAGTATTCT GGCTGCACGCAGCTGGACATTATGCCAACATCCATAACGAGAGAAGCAGTATAAACTGGTCATATAGTCCAACCTTCTACGGCATCCCATATGAGGATGA GGATGATGATGATGATGAAGAGATGGTATGGTTGAGTCACTGGAAGTTTGGAGATGAGCTGCAAGTAGGGGACAAACTGAACATTTCAGCTAAAATGCCA TCCGGGTATTATGTGACACAATGCGCAGTTCGTGTAATTTATACAGAAGATGAAGAAGATCAAAAGAGGCAAGTTATAAAAAGCAACGAGGATGCAAGAA TTGCAGAGAGCAGCTATGGTTGGGGAAGTAATAAGATTACTGACAGAGACTTGTATGCATACCAGGTGGTGAAAGGAGTTTACTTCCTTCACCATCATCC TTACACAACTCCAAATGATATATTGAAGCTGGCTCACTCGTGA
AA sequence Show only first row Show all	>Lus10005171 pacid=23163369 polypeptide=Lus10005171 locus=Lus10005171.g ID=Lus10005171.BGIv1.0 annot-version=v1.0 MAASASSSSRHRYHVFLSFRGGDTRKNFTDHLYVALMKAGINTFRDDDAIERGSHIESEINTAILESRSSIVVLSNDYASSRYCLDELRLIMKLRRTVGH IVLPVFYDVDKDVVRNQTGSYGEAFSRHLVDFGEADMAMVQEWKTALTDIAAAGDLVLRDGYESRFTQQIVAEIARKLNRTVLTVDPYLVGIDDRIADIN SWLQDGSNSVGIATVYGVGGIGKTTIAKTVYNQNFDKFESGSFLEGVREASEEPQGLVRLQKQLVSDLLKTKAKIYSVDEGTVKIRNAISRKRVLLVLDD VDGMDQFRAIIGMREWLHPGSKVVITTRYETLLKAHEVSRIFGVTALNLDESLKLFSWHAFQQDQPIEGFMELSENAVEFCIGLPLALQVLGSSLSGRSL DVWENEIQKVNAVPDSKIQYILKVSYDSLDDDHDKSVFLDIACFFTGKDKDYVTYILDGCGIYSVVAIHNLMIRCLVKVNDENKLLMHQMLRDMGREIVR QESPEDPGKRSRLWRHKDSFSVLTENQGTESVKGLNLNLLVLKGGNFGGHSEKQIQIANAVAQSVVPFQGYYPKLRNLGVFSRKANASGSLIEKIILKPK AFAKMEKLKLLQLNYVKVNGDYDEFPKSLVWLFWRGFSLKYIPDDFDLGKLVALDIRNSRLVNLWKATRFLVKLKLLNLSHNHGLVKTPDFRGLPSLETL KVKDCVKLVEIDESIGTLKKLVSLNLKQCINLKKLPNTISSLKALKKLNISGCSKLYQLPRELGELESLKILYADGIGVKQLPDDSKGPWYSTLVSRILP TKTPRSIDYSLAVFPSYLLELSLADCNLSDGSLPGDLSCLYSLQNLDLRGNPISSLPGSIDKLTSLASLNLDRCESLQSLPKLPPNLEELKAEGCSSLKR IANLPNLLLSLQVELFGCSELAEVDGLFKLVPVINVDVETLHELGLFNMEPIQNIEMTMFNSIANRERQTSPQVLYECGISSTFLPASKVPDWVSDATIG SSHFIQVTSPPSPKHKIRGISLCVVYARDQEVFWLHAAGHYANIHNERSSINWSYSPTFYGIPYEDEDDDDDEEMVWLSHWKFGDELQVGDKLNISAKMP SGYYVTQCAVRVIYTEDEEDQKRQVIKSNEDARIAESSYGWGSNKITDRDLYAYQVVKGVYFLHHHPYTTPNDILKLAHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	0	1
					Lus10033269 [exp]	5.0	0.9458
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	6.2	0.9391
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	6.3	0.9439
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	8.5	0.9310
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	8.8	0.9355
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	9.4	0.9310
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	10.2	0.9367
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	12.4	0.9180
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	12.5	0.9381
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	12.7	0.9357

Compare expression of checked genes

Lus10005171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.