Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13420 217 / 2e-63 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G70300 155 / 2e-41 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 151 / 7e-40 Potassium transporter family protein (.1) AT1G60160 150 / 8e-40 Potassium transporter family protein (.1) AT2G40540 150 / 9e-40 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT4G33530 142 / 1e-36 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT1G31120 141 / 1e-36 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 138 / 1e-35 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT2G30070 134 / 3e-34 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G19960 130 / 1e-32 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013304 [exp] 355 / 1e-114 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10027004 [exp] 186 / 2e-52 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 182 / 1e-50 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10032154 [exp] 168 / 3e-46 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10014531 [exp] 168 / 5e-46 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030632 [exp] 157 / 5e-42 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030857 [exp] 157 / 6e-42 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012888 [exp] 151 / 4e-40 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10030539 [exp] 152 / 5e-40 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G069799 [exp] 221 / 8e-66 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 216 / 6e-63 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 214 / 2e-62 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G132500 [exp] 182 / 4e-51 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.019G056500 [exp] 157 / 5e-42 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 157 / 5e-42 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.003G023900 [exp] 154 / 5e-41 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.008G147400 [exp] 150 / 1e-39 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.003G109800 [exp] 150 / 1e-39 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123700 [exp] 150 / 1e-39 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10005194 pacid=23145840 polypeptide=Lus10005194 locus=Lus10005194.g ID=Lus10005194.BGIv1.0 annot-version=v1.0 ATGGACAATTCGAAGCTGGCGAAGGAAGTCTCAGCTGAAGCCAGAAGCAAAAGGAGCAGCTGGAGGAAGCTCGAGGAAGAAGAAGAGTATGCAGCTGAGA TTCAAAACGACGGCGGATTAGCTACCGATCAATTCCCAATGATTACTCCCAAGGAAAGGAAGGGCTCATCCGTGGCGAAAAATTGGAGGCGAACCATAAG CTTCGGGTTCCAGAGCATCAGAGTGGTCTACGGGGACATCGGAACCTCACCACTCTACGTCTACAAGAGCACATTCACCGACGGCATCAAAACCAACGAA GACATCCTAAGAGTCCTCTCCCTAATCATATACACAATCCTTTTGGTCGCCCTAATCAAGTACGTAGCCATAGTCGTGTGGGCCAACGACAGTGGCGACG GTGGGACCTTGGTACTCTACTCTTTACTCTACCGTCACTTGAGAGTCAGCCTGATCCCTAACCAGCAGCCCGAGGACGTGCAGCTCTCGAACTACAACCT CGAGCTGCCTTCGCGACACCCAACGAGGAGATTGGCTCACTATGTGAAGAGTAAGATGGAGACCAAGAGAGTGTTGCAGATTCTGATGTTTGTTGTTACT ATCTTGGGGACTTCCATGGTCATCGGAGATGGGATTCTCACTACTAGCATTTCGGTTCTTTCGGCGGTTGAAGAGTTTCGTCGTTTTTGGGAAAAGTCAT TTTTACAAGATAAGTTTTGCAGGATAGGTGTGTCCAGCATTAATAGCGTATATTGGGCAATAGCGGCTCACTTGTCCAAGTTTCCCGAGGATGTTCAAGA TACCTTCTACAAGTCCATTCCCGATGAACACGAGTTAGGATTGCTAGACAGGACTGAGTCGAGTATTAAGTCATTGGATAGAAGCGGTAGGTGTCGTTTG ATAGCAAGAAGTCGATACGATCTCTACAACCCGGACGAAATTTGGGATTGCGGTGGTGGTGGTGATGGTGATCACAACATGCATGATAAGCGTAATAATG CTACTAATATGGAAGACAAGGCTCTGCTTAATCCTCCTCTTCTTCACATCATTCATGGCCGTACAGATAGTCTATCTCACAACAGTGCTCTACAAGTTCA AACAAGGAGGCTACTTACCACTAGCATTCTCACTTTTCCTAATGATGGGCATGGGAACATGGCACTACGACCATAA
AA sequence Show only first row Show all	>Lus10005194 pacid=23145840 polypeptide=Lus10005194 locus=Lus10005194.g ID=Lus10005194.BGIv1.0 annot-version=v1.0 MDNSKLAKEVSAEARSKRSSWRKLEEEEEYAAEIQNDGGLATDQFPMITPKERKGSSVAKNWRRTISFGFQSIRVVYGDIGTSPLYVYKSTFTDGIKTNE DILRVLSLIIYTILLVALIKYVAIVVWANDSGDGGTLVLYSLLYRHLRVSLIPNQQPEDVQLSNYNLELPSRHPTRRLAHYVKSKMETKRVLQILMFVVT ILGTSMVIGDGILTTSISVLSAVEEFRRFWEKSFLQDKFCRIGVSSINSVYWAIAAHLSKFPEDVQDTFYKSIPDEHELGLLDRTESSIKSLDRSGRCRL IARSRYDLYNPDEIWDCGGGGDGDHNMHDKRNNATNMEDKALLNPPLLHIIHGRTDSLSHNSALQVQTRRLLTTSILTFPNDGHGNMALRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	0	1
					Lus10000273 [exp]	1.4	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	2.4	1.0000
					Lus10004853 [exp]	2.8	1.0000
AT1G04670			unknown protein		Lus10002298 [exp]	3.0	1.0000
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	4.0	1.0000
					Lus10032828 [exp]	4.2	1.0000
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	4.5	1.0000
					Lus10027667 [exp]	4.5	1.0000
					Lus10019051 [exp]	4.7	1.0000
					Lus10015682 [exp]	4.9	1.0000

Compare expression of checked genes

Lus10005194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.