Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 347 / 1e-101 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 339 / 3e-97 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 238 / 2e-65 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46530 207 / 3e-55 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G59218 198 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 198 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58390 192 / 5e-50 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 191 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) AT1G58602 191 / 3e-49 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT3G07040 186 / 4e-48 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022351 [exp] 884 / 0 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 498 / 8e-158 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 441 / 4e-136 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 410 / 3e-124 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 389 / 2e-116 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 378 / 7e-111 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 375 / 3e-110 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 357 / 8e-104 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 357 / 2e-103 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 560 / 0 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 548 / 3e-176 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 553 / 2e-175 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 536 / 1e-171 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 528 / 2e-168 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 520 / 2e-165 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 508 / 3e-161 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 501 / 3e-158 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 480 / 8e-151 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 468 / 5e-146 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005218 pacid=23155715 polypeptide=Lus10005218 locus=Lus10005218.g ID=Lus10005218.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAGCTCTGTTCAACGTCGCCGACTGGGTACTGAACCAGCTAGGCTCTAAACTGCTTCAACAAGCTTCCCTCTTATGGGGGATCGAAGACG ACGTCAGCAAACTAACCCGCACCTTCTCCACCATCCAAGCACTTCTCCTCGACGCTGACCAGAAATCATCTTCCTCATCCCAGACTCATCAACTTCAGCT CTGGCTCAAGGAACTATCAGAAGTTGTGTACGATGCTCAAGACTTGCTCGATGACTTCAACACTGAGATGCGGCGGCGTCGCCAGACTTCCGGTAGCCAA CGAATTTCCAAAGAGGTAACCGATTTCTTCTCCAGCTCCAATCAAATTTCTTACGGCTTGCAAATCGCCCACGGGATTCGAGAAATTAGGGCTAGAATCG ATGAGATCGCGGAGAGGGGGAGTATGTTCAATTTGTTAGAGTATCATCCTGTAGTGGATGATCGTAAGGAGAGGGAGCAGACTCACTCCGGTGTTCCTCA TGTGGTTATTGGGCGAGAAACTGATAAAGAAAATATCGTCAAGCTTCTGCTGTCGTCGATATCTCGAGACAAGTTTTCGGTAGTTCCCATTGTTGGGATT GGTGGATTAGGTAAGACCACGCTTGCTCAGCTGGTGTACAATGACGGGAGAGTGAAATCTCACTATGAGGTTGCAGCTTGGGTATGTGTTTCGGAGAATT TCGATGTCAAGTTGATAGTTGAAAAGATTATCGGGTCCTGTACAGGGAAGAGACCAGAAGGGAACCTGGAGATGGATAGTTTGAGAAAACGTTTGCACGA GATTATCAGTGGGAAGACGTGTTTGGTTGTGTTGGACGATGTTTGGAACCAGGATAGAGAAAAATGGAGCCGGCTGAAGAGCTTGTTAATGTGTGGGGGT GGCAAGGGTAGCTGCAGCGTGATGATAACCACGAGGCTGAAGAAGGTTGCGAGGCTAGCTAATACTAGGAAGGTGGAGCCGTATGAACTCAAGGGTCTAA GTGAAAATGAGGCTTGGTCTTTGTTTAGAGAGATGGCGTTTGCAGGCGGGGAAGTGACAAGTGTGAAGCACGAGCGTATTGGTAGGGAGATTGTAGAGAA GTGCAAAGGGGTTCCTCTTGCGGTTAGGACGATTGCTGGGGCTTTGCTCTTTAGGGAGACGGAATCAGAATGGGCTGAATTTCGGAGTAAGGAGATATGG GAAATGGATCAGGACGAGAGCGATATTATGCCAACTTTGAAGCTGAGTTATGACAATTTACCTACGCATTTGAAGCATTGTTTTGCTTACTGTAGATTGT TCCCGAAGGATTACGAGATGAACGTGAAACAATTGATACAGCTTTGGATTGCACAAGGGTATGTTAGTTCGTCAGACCTTCCAAGCCAGTATAATGTCGG TCTTGAATATTTCAAGGATCTTCTTTGGAGATCTTTCTTTCAAGAGGTGACACAGGATGAATGGGGAAATCTTGTATACTGTAAAATGCATGATCTGATG CATGATCTAGCTGTAGCTGTTGCAGGTAAAGAGAGTGTCACTTTGCACGTTTCGAGTTTACCAGATGATGTCGATATAATAAGAATTCGTCATGTATCGC TGGCTTTCAAGGTTATGTTTCTAGAAGAACTATGCCAAGTTTCATCTCTCATAGTCAACAATGCTGATAAACTGCGGACATTTTTTGTTATAAGAAAGCC ATTATATTGTGATCGCTGGACAATGTCCGACGTTCCAATCGCCTTCTCCAATACGACAAGTTTGAGGGTATTGGATCTGAGTTTTTTCAAGATTATGGTA ATCTCACAAACCATTTATAAATTGAAGCATTTGAGATATCTCGATCTTTCCGGGAACAACATGACAACCTTACCGGAGGAGATCACATGGCTGCTAAATT TAGAAGTACTCATGCTAGAAGAGTGTAGGTTGCTTGAAAAACTGCCCAAAGGTACCGGAGATCTCTCGAATCTTTCTCATCTTGCCCTCGGTGGATGCCC TGCCTTGATATGCTTGCCACTTGGGATCGGACAACTCTGTTATTTGCGAGAATTGTCCGAATTCCTGCTCGCAGAAGGTGACCAAAAGTGTAACAGTAAT GCAGCAGCTGGGATTGGCGAATTGCGGTACTTGAATAACCTGAGGGGAAAGTTGATGATCCAAAATCTGGAAAGAGTGAATGATCCTTCAGAAGGCGAAA CAGCTAACTTGAGAGAGAAGCAATATCTGGAGCAATTGCTGCTGTCGTGGGAAAGCGGGAGAGACAATGCTGATGTTGTTGCAGAAGGAAAATTGCTTGA AGCTCTACGACCACACCCGAATTTAAAGATGCTAACTTTAAGTTGCAATGCTGGGTTGAAGTGTCCAAGTTGGCTTCCTTGTGTAACGAATTTGGTCGAA ATAAGACTCGAGGAGTCTCCTAACTGGACGAGCCTTCCTCCATTGGATCAACTTCCTTTCCTTGCGAAACTGGAGCTTTCTTGCCTATACTCTTTAGAAT ATATATCCTCTGCTGCTTCTTCTATCTTTTTCCCGTCTCTCGAGTACTTGGAACTCAAGTCTTGTCCGAAATTGAAGGGATGGTTGACTCCGGAAGGAGT ATTGCCACAATTTCCTTGTGTTTCTGAAGTGACCATTGGTGGCTGCTATGGCATCACATCCATTCCCCATTTTTCATTACATTTGCAGCACTTGACATTT TCTGGTGGCAGCAAAGAGTTGTTGAATCAGATTCTGAGGATCATCCCTTCATCTTCTCCACCATGCTCGTCTCGACTCGAGCATCTGGATATATCCGAAG TAATGGATCTGGATACCCTTCCAGAGAATTTACTCCTACGTCTTTCTTCATCCATGAAAGAGCTATGCATCAGTGACTGTCCTGAGCTAAGGACTCTTTC TCCAGCTCTGCCAAATCACCTCACTTCCCTCAAGAAACTTGACATCTATGGATGCGAGGAATTGGATCTGTGTGATCATGAAACGAAGCAGCTCGACAGT ATTGTCCTGCCAAGACTCTCCTCTATCAATTTCAATGGCATTCGGAATTTGACTTCGCTCCCGGATTGGCTTCAGCAAGCGCCAAACTTGAAAGAGATCA AGACTCGAGATTGTCCCATACAGTGTATCCCAGAGTGGATGCCAAAGCTCTCGGAATTAGAGCTGCTGGAAATGAGACAGTGGGGAAGATCTGTCGCCGA ATGTATCACCGAAGACTGGCCGAAGATCGCTCACATCCGTACTATAGTCTTAGACAAAGTATGTGTCAAGAAGGATGGGTTCCGTCAGCCATTCAATGAT GAAATGGAAGAGGAAGATGGTTGGGATACTGTCGAAGTTCTAGGGCTCGTTATTCAACAACGATGGGGACCAGAGGAAGAAGTAGGCGGAGGAGAAGAGA CATCCAAACTTGTACAGTATGTTCTTGTCTTTGCCTTGTTGATGTTTCCTATTAAAGCTAAGCTTACCGTTTTGGCATACGGATTTTCGTTGCAGGTTTT CCAGGAACTGCAGCTCGAGACTGTCCGGAGCTTGTAA
AA sequence Show only first row Show all	>Lus10005218 pacid=23155715 polypeptide=Lus10005218 locus=Lus10005218.g ID=Lus10005218.BGIv1.0 annot-version=v1.0 MAEAALFNVADWVLNQLGSKLLQQASLLWGIEDDVSKLTRTFSTIQALLLDADQKSSSSSQTHQLQLWLKELSEVVYDAQDLLDDFNTEMRRRRQTSGSQ RISKEVTDFFSSSNQISYGLQIAHGIREIRARIDEIAERGSMFNLLEYHPVVDDRKEREQTHSGVPHVVIGRETDKENIVKLLLSSISRDKFSVVPIVGI GGLGKTTLAQLVYNDGRVKSHYEVAAWVCVSENFDVKLIVEKIIGSCTGKRPEGNLEMDSLRKRLHEIISGKTCLVVLDDVWNQDREKWSRLKSLLMCGG GKGSCSVMITTRLKKVARLANTRKVEPYELKGLSENEAWSLFREMAFAGGEVTSVKHERIGREIVEKCKGVPLAVRTIAGALLFRETESEWAEFRSKEIW EMDQDESDIMPTLKLSYDNLPTHLKHCFAYCRLFPKDYEMNVKQLIQLWIAQGYVSSSDLPSQYNVGLEYFKDLLWRSFFQEVTQDEWGNLVYCKMHDLM HDLAVAVAGKESVTLHVSSLPDDVDIIRIRHVSLAFKVMFLEELCQVSSLIVNNADKLRTFFVIRKPLYCDRWTMSDVPIAFSNTTSLRVLDLSFFKIMV ISQTIYKLKHLRYLDLSGNNMTTLPEEITWLLNLEVLMLEECRLLEKLPKGTGDLSNLSHLALGGCPALICLPLGIGQLCYLRELSEFLLAEGDQKCNSN AAAGIGELRYLNNLRGKLMIQNLERVNDPSEGETANLREKQYLEQLLLSWESGRDNADVVAEGKLLEALRPHPNLKMLTLSCNAGLKCPSWLPCVTNLVE IRLEESPNWTSLPPLDQLPFLAKLELSCLYSLEYISSAASSIFFPSLEYLELKSCPKLKGWLTPEGVLPQFPCVSEVTIGGCYGITSIPHFSLHLQHLTF SGGSKELLNQILRIIPSSSPPCSSRLEHLDISEVMDLDTLPENLLLRLSSSMKELCISDCPELRTLSPALPNHLTSLKKLDIYGCEELDLCDHETKQLDS IVLPRLSSINFNGIRNLTSLPDWLQQAPNLKEIKTRDCPIQCIPEWMPKLSELELLEMRQWGRSVAECITEDWPKIAHIRTIVLDKVCVKKDGFRQPFND EMEEEDGWDTVEVLGLVIQQRWGPEEEVGGGEETSKLVQYVLVFALLMFPIKAKLTVLAYGFSLQVFQELQLETVRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	2.2	0.8219
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	4.7	0.7882
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	6.9	0.7808
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	6.9	0.7682
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	9.5	0.7232
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	11.0	0.7756
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	11.2	0.7579
AT5G59830			unknown protein		Lus10040857 [exp]	16.2	0.7061
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	16.7	0.7229
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	21.0	0.7695

Compare expression of checked genes

Lus10005218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.