Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27035 110 / 4e-31 AtENODL20 early nodulin-like protein 20 (.1) AT5G15350 104 / 1e-28 AtENODL17 early nodulin-like protein 17 (.1) AT4G12880 97 / 3e-26 AtENODL19 early nodulin-like protein 19 (.1.2) AT3G01070 79 / 7e-19 AtENODL16 early nodulin-like protein 16 (.1) AT3G27200 69 / 5e-15 Cupredoxin superfamily protein (.1) AT3G17675 67 / 8e-15 Cupredoxin superfamily protein (.1) AT5G26330 67 / 3e-14 Cupredoxin superfamily protein (.1) AT2G32300 67 / 7e-14 UCC1 uclacyanin 1 (.1) AT2G31050 64 / 4e-13 Cupredoxin superfamily protein (.1) AT2G26720 62 / 2e-12 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026749 [exp] 122 / 1e-35 AT2G27035 135 / 7e-41 early nodulin-like protein 20 (.1) Lus10025536 [exp] 108 / 3e-30 AT2G27035 148 / 5e-46 early nodulin-like protein 20 (.1) Lus10026064 [exp] 91 / 2e-23 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10030690 [exp] 91 / 4e-23 AT5G15350 190 / 4e-62 early nodulin-like protein 17 (.1) Lus10005231 [exp] 91 / 5e-23 AT5G15350 192 / 8e-63 early nodulin-like protein 17 (.1) Lus10014356 [exp] 89 / 1e-22 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10025535 [exp] 92 / 4e-22 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10012085 [exp] 68 / 2e-14 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 66 / 8e-14 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088500 [exp] 156 / 4e-49 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.001G219800 [exp] 125 / 1e-36 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.001G219900 [exp] 122 / 5e-36 AT2G27035 136 / 2e-41 early nodulin-like protein 20 (.1) Potri.017G088600 [exp] 106 / 2e-29 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.003G183300 [exp] 100 / 1e-26 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.001G043600 [exp] 96 / 3e-25 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.004G121100 [exp] 95 / 5e-25 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.008G151000 [exp] 69 / 7e-15 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 67 / 2e-14 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 67 / 2e-14 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10005229 pacid=23155688 polypeptide=Lus10005229 locus=Lus10005229.g ID=Lus10005229.BGIv1.0 annot-version=v1.0 ATGGCGGGGACACTGATCATGATGATGATGATGATGATAATGTTGGTGTTGGGAGGCAGTGAGGCCTCACGTCACAAAGTTGGAAGCAAAAATGGATGGA TCCCTAATTTCAACTACACTCCCTGGTCTTCCCACCAACGTTTCTTCGTCGGCGATTGGCTCTTGTTTGTGTTCGACAAGCGCTATTACAACGTGCTGGA GGTGAACGTGACGAGCTACGACGTATGCGAGGAACGAGGCTTCATCAACAACGTGACACGTGGAGGGAGAGATGTGGTGGAGCTGACGGAAGCAAGGCCT TACTATTTCCTCAGCGGCGGTGGATACTGTTGGGGCGGAATGAAAGTTGAAGTCAACGTCACCGCCCAACCAGCTCCGGCTCCGGCTCCGAGTTCCGATC TACACTCTAATAATGCTCCGGACACTCTAATAATCCCCCGCCCGCCACACCGTTTAATGATCATCGTCATGGCTGTGTTCTTTACCTGA
AA sequence Show only first row Show all	>Lus10005229 pacid=23155688 polypeptide=Lus10005229 locus=Lus10005229.g ID=Lus10005229.BGIv1.0 annot-version=v1.0 MAGTLIMMMMMMIMLVLGGSEASRHKVGSKNGWIPNFNYTPWSSHQRFFVGDWLLFVFDKRYYNVLEVNVTSYDVCEERGFINNVTRGGRDVVELTEARP YYFLSGGGYCWGGMKVEVNVTAQPAPAPAPSSDLHSNNAPDTLIIPRPPHRLMIIVMAVFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	1.7	0.9405
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	2.4	0.9308
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	2.6	0.9137
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	2.8	0.9335
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	4.0	0.9306
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	5.0	0.9193
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	6.9	0.9178
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	7.3	0.8996
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	8.1	0.8932
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10021334 [exp]	8.8	0.8404

Compare expression of checked genes

Lus10005229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.