Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15350 184 / 1e-59 AtENODL17 early nodulin-like protein 17 (.1) AT3G01070 129 / 3e-38 AtENODL16 early nodulin-like protein 16 (.1) AT4G12880 124 / 2e-36 AtENODL19 early nodulin-like protein 19 (.1.2) AT2G27035 90 / 1e-22 AtENODL20 early nodulin-like protein 20 (.1) AT5G26330 62 / 4e-12 Cupredoxin superfamily protein (.1) AT3G20570 62 / 5e-12 AtENODL9 early nodulin-like protein 9 (.1) AT2G25060 62 / 6e-12 AtENODL14 early nodulin-like protein 14 (.1) AT5G53870 61 / 3e-11 AtENODL1 early nodulin-like protein 1 (.1) AT2G23990 61 / 3e-11 AtENODL11 early nodulin-like protein 11 (.1.2) AT2G31050 58 / 1e-10 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030690 [exp] 363 / 4e-130 AT5G15350 190 / 4e-62 early nodulin-like protein 17 (.1) Lus10026064 [exp] 98 / 1e-25 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10026749 [exp] 94 / 4e-24 AT2G27035 135 / 7e-41 early nodulin-like protein 20 (.1) Lus10014356 [exp] 89 / 2e-22 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10005229 [exp] 89 / 2e-22 AT2G27035 124 / 7e-37 early nodulin-like protein 20 (.1) Lus10025535 [exp] 86 / 1e-19 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10012085 [exp] 66 / 2e-13 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 64 / 5e-13 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10043063 [exp] 64 / 2e-12 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088600 [exp] 227 / 2e-76 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.004G121100 [exp] 198 / 4e-65 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.001G043600 [exp] 107 / 1e-29 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.003G183300 [exp] 107 / 3e-29 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.017G088500 [exp] 100 / 2e-26 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.001G219900 [exp] 90 / 9e-23 AT2G27035 136 / 2e-41 early nodulin-like protein 20 (.1) Potri.001G219800 [exp] 88 / 1e-21 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.003G047300 [exp] 72 / 1e-15 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 65 / 2e-13 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 63 / 2e-12 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10005231 pacid=23155682 polypeptide=Lus10005231 locus=Lus10005231.g ID=Lus10005231.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGCTTAGCTTGTTCAACTCGCCTCTGCTGATTGCAGCGGCGGTGGTTGTGCTCTGCGCTGCCATGGCACCGGAAGTCACTGCCAAGAGAT ACACAGTCGGATCCAACATGGGTTGGACTACTAATGTCAATTACTCCATTTGGGCTCAGGATTTGCACTTCTACAATGACGACTGGCTCTGCATATTTGC CTTGGAGATGTCTGACATTGGGAAGCTTGCAGTTTTCGTGTACGACAGGAACCAGATGAACGTGCTGGAGGTGAACAAGACCGACTACGAGAGTTGCAAC GCCGACCACCCGCTCCACAACTGGACCACCGGTGCAGGAAGGGACGTGGTTCCCCTCAACGTGACTCGCCACTACTACTTCATCAGCGGTAAAGGGTTCT GTTACGGAGGCATGAAGTTGGCTCTCCGCGTCGAGAAACACCCTCCTCCGCCAACCGCTTCACCCGTCAAGAGCGATGCTTCTCCCATCAGCATTCTCGG CCTTGGGAGCTGCGGCCGATACGTGCTGCCTGCAGTTTTCGCCATCGGAGCGTTGTGGGATGGATTCGTTCACCTCTGGTAG
AA sequence Show only first row Show all	>Lus10005231 pacid=23155682 polypeptide=Lus10005231 locus=Lus10005231.g ID=Lus10005231.BGIv1.0 annot-version=v1.0 MEQKLSLFNSPLLIAAAVVVLCAAMAPEVTAKRYTVGSNMGWTTNVNYSIWAQDLHFYNDDWLCIFALEMSDIGKLAVFVYDRNQMNVLEVNKTDYESCN ADHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLALRVEKHPPPPTASPVKSDASPISILGLGSCGRYVLPAVFAIGALWDGFVHLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10005231 [exp]	0	1
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	2.4	0.8526
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	2.8	0.8722
AT2G01818			PLATZ transcription factor fam...		Lus10013242 [exp]	8.2	0.7043
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	12.0	0.7773
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	12.8	0.8113
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	14.3	0.7814
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	16.6	0.7867
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	18.3	0.8036
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	21.4	0.7166
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	22.9	0.6733

Compare expression of checked genes

Lus10005231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.