Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15240 509 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 469 / 1e-164 Transmembrane amino acid transporter family protein (.1) AT2G41190 336 / 9e-111 Transmembrane amino acid transporter family protein (.1) AT2G39130 335 / 3e-110 Transmembrane amino acid transporter family protein (.1) AT3G54830 318 / 9e-104 Transmembrane amino acid transporter family protein (.1) AT5G02170 305 / 5e-99 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 305 / 1e-98 Transmembrane amino acid transporter family protein (.1) AT3G09340 302 / 1e-97 Transmembrane amino acid transporter family protein (.1) AT3G09330 301 / 2e-97 Transmembrane amino acid transporter family protein (.1) AT5G16740 197 / 2e-58 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030683 [exp] 846 / 0 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 433 / 3e-150 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 413 / 5e-142 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 311 / 8e-101 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 297 / 1e-94 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 298 / 2e-94 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10010457 [exp] 295 / 9e-89 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10023029 [exp] 257 / 2e-82 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10024374 [exp] 239 / 4e-73 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083500 [exp] 603 / 0 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 596 / 0 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 432 / 5e-150 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 426 / 9e-148 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 354 / 1e-119 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 340 / 6e-112 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 334 / 9e-110 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 310 / 2e-100 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 259 / 3e-82 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 227 / 2e-69 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10005239 pacid=23155716 polypeptide=Lus10005239 locus=Lus10005239.g ID=Lus10005239.BGIv1.0 annot-version=v1.0 ATGGAAGTATCTCCTCATACCGACTCTTCGCTGGATGTTCCATTAATCATTGATCAAGAGCAGCACAAGCTTGCATGCAAGCTTGATGCTGATCTAGAAT CCAGTTTCGATTCTCGAGATGAAGGAAATACTTCTTCCTTCAAAACCATGTTTCATGGACTAAATTCGTTATCAGGTGTTGGGATTCTTTCAACTCCATA CGCTGTCGCATCCGGAGGATGGCTGAGCTTGATCTTATTAATGGTAATAGCCGCTGCAGCATACTACTCAGGTCTACTGATTAAAAGGTGTATGGAAGAA GATTCAACGATCAGAACATATCCTGATATAGGCGACAGAGCTTTCGGCAAGAAAGGGAAGATTCTGGTATCTGTCTTCATGAACGTGGAGCTTTATTTGG TGGCGACTGGATTCCTAATTCTGGAAGGTGATAACTTGGTGAATTTGTTCCCCAACATGGCAATTAAAATAGCGGGGCTACACATAGGCGGAAGGCAAAG CTTTGTGATACTCGTTGCTCTCATAATATTGCCTACTGTTTGCTTGGACAACATGAACTTGCTATCCTACGTCTCTGCTAGTGGAGTTTTGGCCTCTGTC ATCATCCTCGTTTCGATTTTCTGCACTGGTGCATTTGAAGGAGTTGGATTCCATCACAAAGGAACGGCATTGAATTGGGGTGGAATTCCGACTGCTGTTA GCTTGTACGCTTTCTGTTACTGTGCTCATCCTGTCTTCCCAACTCTCTACACTTCCATGAAAAACAAACAGCAATTCTCCAATGTCTTGCTAGTGTGCTT CATTCTCTGCACACTATGCTACGCATTAATGGCCATCTTCGGCTACATGATGTTCGGATCGACAGTCCAGTCCCAAATAACTTTAAACTTACCGACAAAC AAATTCACCGCGAAGCTAGCGATATACACCACGTTAGTGAACCCCGTAGCGAAATATGCACTCATGGTCACACCTATAGTGAACGTAGTGAAGAAGAGGT TTCGAGGCTACTGCAACAAGAAGCCATTCGGCTTCTTCATCAGCGCTGCTTTCGTCATCAGTACGGTCATCGTGGCTCTGGCATTGCCCTTCTTTGGAGA CTTAATGTCTCTGGTGGGAGCATTCCTGAGCGTGACGGCGTCCATCATAATTCCATGCGCCTGCTACCTGAAGATCTCCGGGAGTTGTAACAAGTTTGAG TTGGAGACGGTGTTGCTTTGGGGTATCGTAGCGTTGGGTGTTGTCATTGTCATCTTTGGAACCTATACAGCTGTGTTGCAGATATTCCACCAGCTGCTGT AA
AA sequence Show only first row Show all	>Lus10005239 pacid=23155716 polypeptide=Lus10005239 locus=Lus10005239.g ID=Lus10005239.BGIv1.0 annot-version=v1.0 MEVSPHTDSSLDVPLIIDQEQHKLACKLDADLESSFDSRDEGNTSSFKTMFHGLNSLSGVGILSTPYAVASGGWLSLILLMVIAAAAYYSGLLIKRCMEE DSTIRTYPDIGDRAFGKKGKILVSVFMNVELYLVATGFLILEGDNLVNLFPNMAIKIAGLHIGGRQSFVILVALIILPTVCLDNMNLLSYVSASGVLASV IILVSIFCTGAFEGVGFHHKGTALNWGGIPTAVSLYAFCYCAHPVFPTLYTSMKNKQQFSNVLLVCFILCTLCYALMAIFGYMMFGSTVQSQITLNLPTN KFTAKLAIYTTLVNPVAKYALMVTPIVNVVKKRFRGYCNKKPFGFFISAAFVISTVIVALALPFFGDLMSLVGAFLSVTASIIIPCACYLKISGSCNKFE LETVLLWGIVALGVVIVIFGTYTAVLQIFHQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	0	1
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	2.6	0.8376
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	3.2	0.8204
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	4.0	0.8221
AT1G06930			unknown protein		Lus10034209 [exp]	4.9	0.8367
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	5.5	0.8168
					Lus10006286 [exp]	15.0	0.8058
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	16.4	0.7408
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	18.0	0.8334
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	18.9	0.7358
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	20.3	0.8138

Compare expression of checked genes

Lus10005239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.