Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28910 253 / 6e-83 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT3G47600 245 / 1e-79 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT1G74650 240 / 1e-77 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT5G62470 236 / 9e-76 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G08810 210 / 9e-67 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 180 / 2e-54 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT2G31180 173 / 1e-52 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT4G28110 173 / 2e-52 MYB ATMYB41 myb domain protein 41 (.1) AT3G01140 176 / 3e-52 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G02940 172 / 2e-51 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030677 [exp] 418 / 4e-148 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10015369 [exp] 259 / 4e-85 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10024218 [exp] 244 / 9e-80 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10002056 [exp] 244 / 5e-79 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10042200 [exp] 228 / 2e-72 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10008616 [exp] 228 / 6e-72 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10009522 [exp] 215 / 2e-68 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 213 / 2e-67 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10033003 [exp] 176 / 3e-52 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 257 / 5e-84 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G082500 [exp] 245 / 9e-80 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.013G067500 [exp] 215 / 4e-68 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 214 / 2e-67 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.019G118200 [exp] 180 / 6e-54 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.017G086300 [exp] 180 / 9e-54 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.013G148600 [exp] 179 / 2e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 177 / 8e-53 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.012G140700 [exp] 172 / 1e-51 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.011G041600 [exp] 174 / 2e-51 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005245 pacid=23155699 polypeptide=Lus10005245 locus=Lus10005245.g ID=Lus10005245.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCACCTTGCTGTGATGCAGGGGGAGTTAAGAAAGGGCCATGGACTCCCGAAGAAGACATCCTTCTCGTCTCCTACATTCACCACCATGGCC CTTCTAACTGGAGATCCATCCCCACCAACACTGGGTTGCGTAGATGCAGCAAAAGCTGCCGGCTGAGATGGACTAATTACCTTCGTCCTGGGATCAAACG TGGCAATTTCACTCATCAAGAAGACCAAATGATCACCCATCTCCAAGCCCTTCTCGGCAACAGGTGGGCAGCCATAGCATCATATCTCCCAGAGAGGACA GATAACGACATTAAGAACTACTGGAACACTCATCTGAAGAAGAAGCTGCTCAAAAATTTGTCCAACAATTCACCTCACAGGATTAATAATGGCGTACCGG ATAATCATCAGCGGAATTCTTCTCCAGCTTCACGAACTTCTTCTCCTTCATCATCTGCATCGTCATCGTCGGCTTCATCCTCGAGAGGCCAATGGGAAAG AAGGCTCCAGACAGACATCCACACAGCTCGCCAAGCTCTTTCCGATGCGATTTCTCCATCTCTATCCTCCGCCCCGGATCTCAACTCTTCCCACGCGCCG CCGACGGCGGCTGCGGCGTACGCGTACAGCGCCGAGAATATCGCCAAGTTGCTTAAAGGCTGGATGAAGAAATCGAAAACCGACGACTCGACGGCTGGTG GTGAATCTTCGCAGGTTAGCGGGTATTCGACGGTCGGGTTAGCGGGTCAATCGATGGATCTCGGGTCCGGGTTTACGAATTCGGATCCCGATGATACGAC GACGTGTGGGGACGATAGGAAGGCGGAAGAGGCGCGTTTGTCGTTGCTTGAGATTTTCGGTTGTTGGAGAAATGGCTCCGGGATGAGGAACGGGCGCCCC CCGCCGGGAAATACGAGTTTCTGTCGTCGTTAA
AA sequence Show only first row Show all	>Lus10005245 pacid=23155699 polypeptide=Lus10005245 locus=Lus10005245.g ID=Lus10005245.BGIv1.0 annot-version=v1.0 MGRAPCCDAGGVKKGPWTPEEDILLVSYIHHHGPSNWRSIPTNTGLRRCSKSCRLRWTNYLRPGIKRGNFTHQEDQMITHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLKKKLLKNLSNNSPHRINNGVPDNHQRNSSPASRTSSPSSSASSSSASSSRGQWERRLQTDIHTARQALSDAISPSLSSAPDLNSSHAP PTAAAAYAYSAENIAKLLKGWMKKSKTDDSTAGGESSQVSGYSTVGLAGQSMDLGSGFTNSDPDDTTTCGDDRKAEEARLSLLEIFGCWRNGSGMRNGRP PPGNTSFCRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	2.8	0.8342
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	3.5	0.8046
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	4.0	0.7936
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	6.6	0.8150
AT4G04980			unknown protein		Lus10018473 [exp]	7.2	0.7745
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	7.5	0.7950
AT4G35980			unknown protein		Lus10042598 [exp]	9.0	0.7912
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	10.1	0.7698
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	11.7	0.7951
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	12.0	0.7705

Compare expression of checked genes

Lus10005245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.