Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 457 / 8e-155 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 434 / 8e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 423 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 422 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 394 / 8e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 385 / 3e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 384 / 6e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 381 / 7e-126 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 374 / 3e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 301 / 2e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030667 [exp] 833 / 0 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 659 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 548 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 469 / 9e-160 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 468 / 3e-159 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 417 / 7e-139 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 403 / 2e-133 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014497 [exp] 385 / 5e-127 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 378 / 3e-124 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 499 / 2e-171 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 488 / 3e-167 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 488 / 3e-167 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 480 / 3e-164 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 454 / 6e-154 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 453 / 3e-153 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 444 / 2e-149 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 436 / 2e-146 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 433 / 1e-145 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 325 / 6e-106 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10005256 pacid=23155720 polypeptide=Lus10005256 locus=Lus10005256.g ID=Lus10005256.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTGAAGGTATGCACAAACCTAGGCTCGTCAATCCTCGGCCTAATCGTAGCGTGGAACATGCTCGAAAAGTACCTCCCGCAGCAACTTCGTG GACTCTTCTCCAAATACACGCAAACCCTCTTCGTTCTTTTCAACCCGTACGTTCGGATCCGATTCCCCGAATTCACTTCGGGGAGTCGCTTCCGGAGGAA CGAGGCCTACATCATGATCCACAACTACCTAAGCCTGCACTCCTCCTCCTTCACCTCTTCCGCCAAATCATTAAAGGCCGACACTTTACAAAAAGACGGA AACGCCCTCCAATTGTCGATCGAAGATGGCGTGGAGGTCGTCGACGAGTTCGGCGGCGTTAAAGTCTGGTGGGCCCTCCGTACGACCAGCCCAAAACAGC AGTCCATTAACCTCTACGGGCCAAACGACGACGAGAAGAGGTCGTACGTGCTGACTTTCCACAAGAGGGACAGGGGGTTTGTTACGGGGGAGTATATGAG TCGGGTGGTGGAGGCGGGGAGGGCAATTGTGTCAAGTAATAGGCAGAGGAAGCTTTACTCGAATAACCCAACCCGGAATTGGTGCGGTTGGAGCTCCGTT CGGTTCGAGCACCCGGCAAGTTTCGACACTCTGGCTATGCCGTTGGAGAAGAAAGAGGGGATTAAGAAGGATTTGGTTAAGTTTAGCCAGGGGAAGAGCT ACTATGCTAAGATTGGCAAACCTTGGAAGCGTGGGTATCTGCTCTACGGGCCGCCGGGAACGGGGAAGTCAACGATGATAGCAGCAATAGCCAACTTCCT AAACTACGACATCTACAACTTGGAGTTGACCACCGTGAAGGACAACTCCGAGCTCATCAAGCTACTCCTCGAAACCACCGGTAAATCCATCATCGTAATT GAGGACATCGACTGCTCACTCGACCTCACGGGCCAGAGAAATCCCAAAACGAGGAAGACGAAAAAGAAAAAGAAGAGCAACGAAGATGACAGTGATGACG ACGACGATAATAGCTACTCAGTCTCCAAAGCATTGAAGAAAGCACGGGAGAGCAACAACTCACCATGTGATAGCAAGGTGACGCTGTCGGGACTGTTGAA CTTCATCGACGGGATATGGTCAGCGTGCGGAGGGGAGAGGATCATCGTGTTCACGACCAACTACTTCGACAAGCTCGATCCGGCCTTGATAAGGAGAGGG AGGATGGACATGCACATTGAGATGTCCTACTGCTGCTTCGAGGCGTTTAAGGTGCTGGCCAAGAACTACCTGGATATCGGAGACACGCATAGGTTGTTCG GGAGGGTCGAGGAGCTGTTGTCCGCGGTTAAGGTGACTCCTGCGAGCGTGGCGGAGAATCTGCTGCCCAAATCGGTGGAGGAGAGCGAGGAGAGGTGTTT GAGGAATTTGGTTGATGCTCTTGAGGCCTTGAAGGGGGAGGAAGATGGGAAGTTGAAGGATGCTAGGAGGGAGAGGCTTTGGGGATGGGTGCTGGCCAAG AACTACCTGGATATCGGAGACACGCATAGGTTGTTCGGGAGGGTCGAGGAGCTGTTGTCCGCGGTTAAGGTGACTCCTGCGAGCGTGGCGGAGAATCTGC TGCCCAAATCGGTGGAGGAGAGCGAGGAGAGGTGTTTGAGGAATTTGGTTGATGCTCTTGAGGCCTTGAAGGGGGAGGAAGATGGGAAGTTGAAGGATGC TAGGAGGGAGAGGCTTTGGGGATGGTGGGGGATTTATGATCATGAGGAGAAACAAACAAACCTATTTTCTAGACGAGTCAAACGGCAGCGAGCATTCGAT CGGCGTTGCGACCGCCCAACCCCTGATTGCAACGGCCCAAGGAATTGCGTCGGCCTTGTCGTCGGCTACCCTGACCCGTCGACAACACTGGTTTCGGTGG ACTCGGCGGAGATGACCTCCGATGAGTTAACTGCAGATGGATATAAAACCCTCGAAATCTCCACAGAAACTGAATCATCATCAGGGTCTCGAAGAACAGG CAAGTCAGCGTGA
AA sequence Show only first row Show all	>Lus10005256 pacid=23155720 polypeptide=Lus10005256 locus=Lus10005256.g ID=Lus10005256.BGIv1.0 annot-version=v1.0 MEALKVCTNLGSSILGLIVAWNMLEKYLPQQLRGLFSKYTQTLFVLFNPYVRIRFPEFTSGSRFRRNEAYIMIHNYLSLHSSSFTSSAKSLKADTLQKDG NALQLSIEDGVEVVDEFGGVKVWWALRTTSPKQQSINLYGPNDDEKRSYVLTFHKRDRGFVTGEYMSRVVEAGRAIVSSNRQRKLYSNNPTRNWCGWSSV RFEHPASFDTLAMPLEKKEGIKKDLVKFSQGKSYYAKIGKPWKRGYLLYGPPGTGKSTMIAAIANFLNYDIYNLELTTVKDNSELIKLLLETTGKSIIVI EDIDCSLDLTGQRNPKTRKTKKKKKSNEDDSDDDDDNSYSVSKALKKARESNNSPCDSKVTLSGLLNFIDGIWSACGGERIIVFTTNYFDKLDPALIRRG RMDMHIEMSYCCFEAFKVLAKNYLDIGDTHRLFGRVEELLSAVKVTPASVAENLLPKSVEESEERCLRNLVDALEALKGEEDGKLKDARRERLWGWVLAK NYLDIGDTHRLFGRVEELLSAVKVTPASVAENLLPKSVEESEERCLRNLVDALEALKGEEDGKLKDARRERLWGWWGIYDHEEKQTNLFSRRVKRQRAFD RRCDRPTPDCNGPRNCVGLVVGYPDPSTTLVSVDSAEMTSDELTADGYKTLEISTETESSSGSRRTGKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10005256 [exp]	0	1
					Lus10009393 [exp]	11.1	0.8408
					Lus10007184 [exp]	15.7	0.8399
					Lus10007226 [exp]	19.3	0.8399
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	22.3	0.8399
AT5G22450			unknown protein		Lus10000530 [exp]	24.9	0.8399
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	27.3	0.8399
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	29.5	0.8399
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Lus10029456 [exp]	31.4	0.6521
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	31.5	0.8399
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	33.4	0.8399

Compare expression of checked genes

Lus10005256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.