Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18450 91 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 87 / 1e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07580 79 / 3e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 78 / 4e-17 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47230 79 / 5e-17 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT3G23240 77 / 5e-17 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G47220 78 / 6e-17 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17490 77 / 1e-16 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G61590 75 / 3e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G31230 75 / 5e-16 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013958 [exp] 281 / 9e-96 AT4G18450 116 / 8e-31 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 86 / 6e-20 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10025430 [exp] 84 / 6e-20 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10032499 [exp] 86 / 1e-19 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10030261 [exp] 81 / 2e-18 AT2G44840 125 / 1e-35 ethylene-responsive element binding factor 13 (.1) Lus10027469 [exp] 80 / 5e-18 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10022935 [exp] 81 / 8e-18 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1) Lus10014655 [exp] 80 / 1e-17 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10011829 [exp] 79 / 2e-17 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G051800 [exp] 134 / 4e-38 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061800 [exp] 130 / 1e-36 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 88 / 2e-20 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061700 [exp] 84 / 8e-20 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.001G079800 [exp] 86 / 1e-19 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G154200 [exp] 86 / 3e-19 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G151000 [exp] 83 / 5e-19 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 82 / 5e-19 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.005G223300 [exp] 82 / 1e-18 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.003G080600 [exp] 84 / 2e-18 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10005281 pacid=23175332 polypeptide=Lus10005281 locus=Lus10005281.g ID=Lus10005281.BGIv1.0 annot-version=v1.0 ATGCAGAGCAACATGCCAACTCTGGAGGACGTATGGGCAAGCTTCATCAACGGCAACCAATCACAAAACTACGAAGATCTACCGTCTCTAAAAGATCGAA ACGGTGACGAATTGATGGGAGGACAGCCTATGCAGAGCATTTTGGAGAGGCTGCCGAGCTTGGGGAGATGGATATCAATGGGGGAAGAAGCATGGGATGA AATCCTCAAAGCTAGCTTCATTCGTCCTTCGATGGAAAGTACTGAAGTGCCCTCGGTGAGCGATGCTTTTAGCGACAGGAAAATGGCGGTGGAGAAAAAT AAAGTTGTAAGGACGAAACACTATAGAGGGGTGAGGAGGAGGCCGTGGGGGAAGTATGCTGCGGAGATAAGGGACTCAACGAGGAATAATGGAGCTAGGG TTTGGTTAGGGACGTTTGACACTGCGGAGGAAGCTGCATTGGCTTACGATAGGGCGGCGTTGAGGATCAGGGGACTGAAGAAGGCGCGTCTCAATTTCCC ACTTGAGGCTGTCACTAATAGTTATAATGGTGTCGATCACAATGGTGAATCGGGAGGGAGGAAGAGGAAGAGAGAATCGAGGGAATGTGAAGGGAACGAA GAGAGAGCGGTTGGGAAGGAGGTTAAGCTGGATAGGGATATGGCTCGAGCCGAAGATGAAGGATTATTTCAAGAGGAAGATTTTAAGTTTGACGAGCTAC AACGATTTATCGAAAGTGATTTGTTAAATAATTTGTTGTTTTCTTTATCTCAATAG
AA sequence Show only first row Show all	>Lus10005281 pacid=23175332 polypeptide=Lus10005281 locus=Lus10005281.g ID=Lus10005281.BGIv1.0 annot-version=v1.0 MQSNMPTLEDVWASFINGNQSQNYEDLPSLKDRNGDELMGGQPMQSILERLPSLGRWISMGEEAWDEILKASFIRPSMESTEVPSVSDAFSDRKMAVEKN KVVRTKHYRGVRRRPWGKYAAEIRDSTRNNGARVWLGTFDTAEEAALAYDRAALRIRGLKKARLNFPLEAVTNSYNGVDHNGESGGRKRKRESRECEGNE ERAVGKEVKLDRDMARAEDEGLFQEEDFKFDELQRFIESDLLNNLLFSLSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	0	1
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	3.5	0.6992
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	9.2	0.6571
AT1G27990			unknown protein		Lus10037043 [exp]	9.8	0.6729
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	13.2	0.6510
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	14.2	0.6832
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	16.4	0.6557
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	20.8	0.6440
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	30.4	0.6099
AT5G65030			unknown protein		Lus10014340 [exp]	37.8	0.6514
AT2G32450			Calcium-binding tetratricopept...		Lus10038571 [exp]	45.5	0.5824

Compare expression of checked genes

Lus10005281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.