Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 566 / 2e-177 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 550 / 2e-175 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 202 / 3e-53 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59218 175 / 3e-44 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 175 / 3e-44 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G07040 166 / 1e-41 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 162 / 2e-40 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 157 / 7e-39 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 155 / 4e-38 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 155 / 4e-38 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026109 [exp] 1094 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 1078 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 681 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 643 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 627 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 616 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039577 [exp] 443 / 6e-144 AT3G14460 104 / 3e-24 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 371 / 3e-108 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 353 / 5e-101 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261600 [exp] 1151 / 0 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 1060 / 0 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 935 / 0 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 811 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 712 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 659 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 653 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 648 / 0 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 630 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 628 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005321 pacid=23154607 polypeptide=Lus10005321 locus=Lus10005321.g ID=Lus10005321.BGIv1.0 annot-version=v1.0 ATGGAGGCCGTGACTTCCATCGGCGGTGCAATTCTGTCTGCTTCGTTCCAAGTCCTTCTCGAGAAATTGGGCTCCCGCGACTTACTCAACTACTACGGCA TCAACCGGAGGAAAGTCCTGCTTCAGTTCAAAAACTGGGAACACATGCTCAAGAAGATCCACGCCGTCCTTGATGATGCCGACGACAAACAGATGTCCAA TCGCCTCGTCAAGATCTGGATCGGGGAGCTTAGGGATTTGGCTTATGATCTCGACGACGTCCTCGACGAGTTTTCCACTCAGGTCGGAAGGCACAAATCA AAATCATCATCATCAGATTGTAAGTTCATGGGAATTGATCCGCCTCTCTGTCTTTCCGGTACTATGAACTTGCGTGGTGCCAAATTGAACGCGAAGATAG TTTCCGAAATGGAGAGAATCACCGTTAGGTTGCAAGAGATTACTCTACAGAAAGATGAGCTTCATCTAAGGGAGGGTAATGGGAGAAGATTGTGGGAAAG ACCTCCAACGACTTCTCTGGTCAACGGAGTCAAGGTTTACGGACGAGAAGAGGATCAAGATACTTTGATTGAGATGTTAATGAGTGATGAATTGAATGCT CCTGAAGAAGTTTGTGTGATTCCCCTACTTGGGATGGGTGGAATCGGCAAGACAACTCTAGCTCAGCTCGTCTTCAACGATGCTAGATTGGAATTCGATG TCAGGATTTGGGTCTCAGTTGGGGAAGATTTTGATGTTTTCAAGATCACTAAGCAGATGCTGCAGCTCAACAACTGCGACGGGGAGGATTTAAACTCGTT ACAGCTAGCGTTGAAGGAGAAGTTATCTGGGAACAAATTTCTCATTGTGTTGGATGATGTTTGGAATGAAAGCTACGATACTTGGACTCTCTTTCAGGGC CCTTTTGAAGGAGGATCGGTGCCCGGGAGCAGAGTCATGGTCACGACTCGAAATCAGAATGTCTCTGACATGATTGGTACTGTTCCTGCTTATTGTATGA GGGAGTTGGCTTATGATGATTGTGTGTCTGTGTTTGCACAGCATGCTCTTGGCGAAAGGAGCTTCGATTCGCACCCGAAACTTTTGGAAGTAGGGAGAAA GATTGTCATGAAATGTGGAGGGTTGCCCTTAGCAGCTAAAGCCCTTGGCGGGCTACTACGTGGGAAACAGAATGTTACTGCTTGGCAAGAGGTGTTAAAC AGTAAGATATGGAATTTACCAGAGGGAAAAAATGGGATTCTTCCGGCATTGTGGTTGAGCTACCATCACTTGCCACCCCAATTGAAGAGATGCTTCACTT ATTGCGCGGTATTCCCTAAAGACTACGAATTTAGCCAGCAAGAGCTGGTTTTACTGTGGATGGCAGAAGGGTTTCTGCATCACCAGCCGGATGGTCTGAA GCACGAACCAGAATTGGGGTATCAGTACTTTGATGAGTTGTTGTCGCGATCGTTTTTTCAGGAATCCACGAGCAACAAGTCCAAATACGTAATGCATGAT CTCATCTGCGATCTAGCTTATTCCGTCAGTGGAGAGATATGCTTCCATTTGGATGATGCGCGCTCGAGTAGCTCGAAATCATATGCAAAGGTTCGCCATT CCTCATTTACTCGTCATGTTTGTGATATCTCGCAAAAATTTGAAGTCTTGTATCAGATGAACAATTTGAGAACGTTGTTATCATTGCCGATTCTTCCCAG AAGATATCATCAGTTGACTAGTGGAGTCGTACATGATTTGGTGCCGAAACTGAAACGTTTGAGGGTCCTGTCACTAGCTGGTTACGGTATATCGAACCTG CCTGAGTCCATTGGCGCCTTGAAGCATTTAAGATATCTCAACTTAGCTTACACCGAAATCTGGAGCCTGCCTCAATCGGTTAGTGAACTTGTAAACATGC AGACATTGATATTGTATCGGTGCTGGAAGCTTGTTGCCTTGCCCACCGACATCTGCAATCTAGTTAATCTAGAATATCTCGACATTACCGAGACTGATAG TTTACAGGAGATGCCACATAATATTGGTAACTTGGTAAAGCTTAATATGTTGCCTAAGTTTATTGTAGGGCCAGGGAATGGTTGTGGAATAATCGAGCTG GCAAACATTTCTCGGCTTCAGGGGAAGCTTTGTATTCAAGGATTACATAATGTGGTGAATGCTCGAGGTGCAGAGATCGCCAATCTGAAGGAGAAGTTGC TCATTGATGAGTTGGCCTTGGAATGGACCAACGATTTCCATTGTCACCGTGATGAGAATCGTGAACTTCTGGTCATTGACTCGCTACAACCCCACCATAG CTTGAAGAAACTTAGTGTTAAGTATTATGCTGGTTTGAAGTTCCCAGTGTGGATGACTGATTGCAATTTCGGCAGTATGGTGGAGCTAGAAATCCTTAAT TGCCGTAAAGTTAAATCACTACCACCACTAGGCCAGCTACCTTCACTTAAGAAGTTGAGCATTAAAGGAACCGATGGAGTTAGAGAAGTTGGATCCGAGA TTCGTGGGATTATTGATGCTTCGGGAATTGCTTTTCCGTCGTTGAGGATCCTAAACATGGAGAATATGTTGGAATGGGAGCATTGGTCATGGCTTGATGG TCTCCCTGAAGAAGCTGCTAGACGGTTTCCTTACTTGGTACAACTTTCTATTATAAATTGCCCCAAGTTGGTTGGGAAGTTGCCTGAGTGCCTACCTTCT CTTTCCAAACTCAAGGTTTGTGAGTGCCCATTGTTGAACACTTTGCCACAAGTGCTTCCATCTCTTCACGAACTTATTGTTGTAGATTGTCAAGCTCTTC TCCTGCAGAGTGCCCCTGACCTCAACTACCTTAGTTTATTCCGAATTAGTAGGATTACAGGCCTCGTAAGCCTCGAGGGACTCATCCAGAAAATGATGGC ACTAGATGTGCTGGAGATCAAGTCCTGTGCTGAGATGATGTACTTATCCCAAGATAAGTCTGGTTTCGACCAACTTCGGTATCTCAAGTATATGAAGATC AAGAACTGCGAGAGCCTTGTTTCGTTGGTTGAAGGGGAAGAAGGGTTTTTGCCTTGCAATGTTGAAGTGCTGAGGTTGGAACAATGTCAGAACGTGACAG AATTGCCGAATGGATTAAGCAGCCTCGTTCATCTCAGGGACTTGAATATTGATGGTTGTTCCAATCTCAAGGCCTTTCCAGGCACAGGTTTGCCGTCCAG CATCACATCTTTATGGATCAGAGATTGCCAGTTACTGGAGTCTGTACCCGAGGGAGTTTTTTGTGACAGCAATGACAGCAACAAGAAGCTGCCACATTTA AAGATGCTGTACATAGGAAATTGCCCATCTCTGCAGGCTTCTCCAACTGGTGAACTACCCGTCTCTCTGAAGACCATCTCAAGCAGTTACTTCACGACTC GATCGTTAGACTCGCTGGATAGCCGGTTTGGCAATTTAACGTACATGGAAATAGCAGACTGCCCTTGGCTAGAGAAGTTCCCAGAAGGAGGGTTGTCACC AATAGCATCTCTTACCTATTTAACAATCTCAGGTTGTTTGAATCTTAGTAGTTTGCCTGATCGGATGCAGAATCTATCATCCCTCCAACATTTTGAGCTC CATAAATGTCCAAATGTTGTCTCCTTTCCAGAAGGCGGCTTGCCTCCGAACCTGACAACCCTAATGATCAGGAACTGCAAGAATCTTTCACAGCCTATTT CCAGTTGGGGACTGCACAGGCTCAAATCTCTGAAAAGAATCAAACTTGAAGGTACAAGTCCCAGTACAGATGCAGTATCTTTCCCAGATGAAGAAGGGTT GCTGCTTCCTTCTTCGCTTACCCTGCTTTGGATCCATAGTTTCGACAACCTGAAAGGCATCTCCAAGGGACTGAAGAATCTGAAGGCCCTTGAGAATCTG TGGATCTGGAACTGTCCTAAACTCAAGTCCTTGCCTGAGAGATGCCTCCCTGCTACACTTGGATTCTTGGAGATCCATGCATGCCCTCTCTTGAAGAAAA GGTTCCAGAAAAGGGCAAAGCATTTCCGCAAGTCTAGCATCGCCCGAATCCCTTGCATTGTGGTGGATTCGACAATGTCGGGCATGCCCTTGAACCCTGA GTTCATGTCACAATACTTAGTACATACGTGGGGTCTTGCCTAG
AA sequence Show only first row Show all	>Lus10005321 pacid=23154607 polypeptide=Lus10005321 locus=Lus10005321.g ID=Lus10005321.BGIv1.0 annot-version=v1.0 MEAVTSIGGAILSASFQVLLEKLGSRDLLNYYGINRRKVLLQFKNWEHMLKKIHAVLDDADDKQMSNRLVKIWIGELRDLAYDLDDVLDEFSTQVGRHKS KSSSSDCKFMGIDPPLCLSGTMNLRGAKLNAKIVSEMERITVRLQEITLQKDELHLREGNGRRLWERPPTTSLVNGVKVYGREEDQDTLIEMLMSDELNA PEEVCVIPLLGMGGIGKTTLAQLVFNDARLEFDVRIWVSVGEDFDVFKITKQMLQLNNCDGEDLNSLQLALKEKLSGNKFLIVLDDVWNESYDTWTLFQG PFEGGSVPGSRVMVTTRNQNVSDMIGTVPAYCMRELAYDDCVSVFAQHALGERSFDSHPKLLEVGRKIVMKCGGLPLAAKALGGLLRGKQNVTAWQEVLN SKIWNLPEGKNGILPALWLSYHHLPPQLKRCFTYCAVFPKDYEFSQQELVLLWMAEGFLHHQPDGLKHEPELGYQYFDELLSRSFFQESTSNKSKYVMHD LICDLAYSVSGEICFHLDDARSSSSKSYAKVRHSSFTRHVCDISQKFEVLYQMNNLRTLLSLPILPRRYHQLTSGVVHDLVPKLKRLRVLSLAGYGISNL PESIGALKHLRYLNLAYTEIWSLPQSVSELVNMQTLILYRCWKLVALPTDICNLVNLEYLDITETDSLQEMPHNIGNLVKLNMLPKFIVGPGNGCGIIEL ANISRLQGKLCIQGLHNVVNARGAEIANLKEKLLIDELALEWTNDFHCHRDENRELLVIDSLQPHHSLKKLSVKYYAGLKFPVWMTDCNFGSMVELEILN CRKVKSLPPLGQLPSLKKLSIKGTDGVREVGSEIRGIIDASGIAFPSLRILNMENMLEWEHWSWLDGLPEEAARRFPYLVQLSIINCPKLVGKLPECLPS LSKLKVCECPLLNTLPQVLPSLHELIVVDCQALLLQSAPDLNYLSLFRISRITGLVSLEGLIQKMMALDVLEIKSCAEMMYLSQDKSGFDQLRYLKYMKI KNCESLVSLVEGEEGFLPCNVEVLRLEQCQNVTELPNGLSSLVHLRDLNIDGCSNLKAFPGTGLPSSITSLWIRDCQLLESVPEGVFCDSNDSNKKLPHL KMLYIGNCPSLQASPTGELPVSLKTISSSYFTTRSLDSLDSRFGNLTYMEIADCPWLEKFPEGGLSPIASLTYLTISGCLNLSSLPDRMQNLSSLQHFEL HKCPNVVSFPEGGLPPNLTTLMIRNCKNLSQPISSWGLHRLKSLKRIKLEGTSPSTDAVSFPDEEGLLLPSSLTLLWIHSFDNLKGISKGLKNLKALENL WIWNCPKLKSLPERCLPATLGFLEIHACPLLKKRFQKRAKHFRKSSIARIPCIVVDSTMSGMPLNPEFMSQYLVHTWGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	1.0	0.8551
					Lus10030178 [exp]	2.0	0.8187
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	10.4	0.8012
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	11.4	0.7527
					Lus10021760 [exp]	17.3	0.7121
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	21.6	0.7478
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	22.8	0.7342
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	24.7	0.7631
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	29.3	0.7924
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	32.2	0.7651

Compare expression of checked genes

Lus10005321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.