Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 353 / 1e-113 GARP ARR12 response regulator 12 (.1) AT4G31920 310 / 1e-97 GARP ARR10 response regulator 10 (.1) AT5G58080 252 / 5e-75 GARP ARR18 response regulator 18 (.1) AT4G16110 247 / 1e-72 GARP ARR2 response regulator 2 (.1) AT2G01760 236 / 2e-71 GARP ARR14 response regulator 14 (.1) AT1G67710 214 / 1e-61 GARP ARR11 response regulator 11 (.1) AT3G16857 154 / 2e-39 GARP ARR1 response regulator 1 (.1.2) AT5G49240 139 / 1e-36 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 122 / 2e-30 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT3G46640 103 / 4e-24 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041020 [exp] 1081 / 0 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10037719 [exp] 278 / 7e-84 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 278 / 8e-84 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 226 / 4e-67 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 155 / 2e-41 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10036303 [exp] 151 / 1e-38 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10019058 [exp] 150 / 2e-38 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10025044 [exp] 124 / 3e-30 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 122 / 5e-29 AT4G16110 169 / 4e-45 response regulator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262100 [exp] 646 / 0 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 615 / 0 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.018G111300 [exp] 372 / 9e-120 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 353 / 1e-112 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G135500 [exp] 272 / 5e-82 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 272 / 8e-82 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 261 / 6e-78 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G213500 [exp] 249 / 2e-73 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G053100 [exp] 236 / 8e-70 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 225 / 3e-65 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005340 pacid=23154604 polypeptide=Lus10005340 locus=Lus10005340.g ID=Lus10005340.BGIv1.0 annot-version=v1.0 ATGACTGTGGAGCAAGGAGAAAACAGGGACCAGTTCCCCATTGGCATGAGGGTCTTAGCAGTTGACGATGACCTGACTTGCCTCCTTGTTCTTGAAACCC TTCTTCGCAAATGCCAATATCATGTAACCACCACAAGTCAGGCAAGGATGGCATTGACAATGTTGAGAGAAAGGAGGAACGACTTTGACCTTGTGATTAG TGATGTTCATATGCCTGACATGGATGGCTTTCATTTGCTCGAGAAAGTTGGCCTGGAAATGGACCTCCCTGTTATAATGTTATCAGCAAATAGTGATCCA AAGGTTGTGATGAAGGGGATCACTCACGGTGCTTGTGATTATTTACTGAAGCCTATTCGGATCGAGGAGCTCAAGAACATCTGGCAGCATGTTGTTAGGA GAAAGAAGACTGATAATAGAGACAAGAACAACTCAGACAACAGGGATAATAAGTCTAATTCTCAAAGTGGTGAAGCAACTTCAGAACAGAAACTTAACAA GAAAAGGAAGGACCAAATCGACGAAGAAGATGAGGACTCTGATGACAATGGAAATGATTATGACGATCCGACCAGCCAAAAGAAGCCTAGGGTTGTTTGG TCAGTCGAGTTGCATCGCAAGTTCGTCTCTGCTGTCAACCACTTGGGCGTCGACAAGGCTGTACCAAAGAAGATTTTGGACCTGATGAATGTTGAAAAGC TTACAAGAGAAAATGTGGCAAGTCATCTTCAAAAATACAGGCTTTACCTTAAAAGGATTAGTACTGTGGCGAACCAGCAAGCTAATATGGCAGCAGCTCT GGTAAGCTCCGATGCTTCATATTTGCAAATGGGTCCTTTAACTGGACTTGGGCTGCATAATGTTGCTGGAAACGGACAGTTTCAGAATGGAGGTTTCAGA TCAGTAACTCCTAATGGCATGCTCGGCCGGCTGAATTCTCCAGCCGGTATGAGCTTTCATGGTCTTCCTTCTCCAGGAATGATGCAAGTAGCCCATGGAC AAACTGGTGGCCACTTGGCCAGTCAGAATCAGTTCCAGTCGGTTATAAGTAATGCAAATGTTCTACAAGGCATGCCGGTTTCATTAGAACTTGATCAAAT ACAACCTAACAAGGGGCTTAACTATATGAGAGAGATTCCTACCGCTATCGAAAGTACATCTGGTTTTGCCGACACGAGTATGGCTGTTGGCAGTTCAAAT GGTTCCTTTGTTGGGGCTTCTTCAGACAAGTCCTTGTTTCCAGACAGGCGACGACTCCAAGGGACCCAACCGGATGCAAAATTCTCGAAACAGACTTCTT TGATAGGCTCTTCTTTGGATCAGGGATTTTCGTTGGATCCCGGTAGATGTAATGAAAGCTGGACAAATGCTGCACCATCCACTGGTGTCCAATCTAATTC TTTGATTATAAATGATAGTTTCAGAACGGGTGGTCTTCCAGCAAGTAACATTCTTCGAGATAACATGTCAACAATGACGATGCAGACAAGGAGCCGGCAA TGTGAGGTTTCTCCTCTATCTATGCTGCCCTTACATTTGCAGGACGAGAAAGCAGACTTAGGGTGCCGTTTAGTTTCAGCTAGCAGTGGCGGTGTCGGGG AAATAATTAGTAGTTGGGATAATAATAGGCAGGCTTCACCTTACTACTTCAATGCCGCGTCTAGCTCAGGAAACTCGTCGATTCTTGATGATGTGATTAA CCAAAGATGGGACGCAAATTGTAATGCAATGTTGCAGAGAAATCCTAGCTTCGGTTCGACCGGACAGTCAAGTTTTATCGATAGCTCGTTGGTAAAGCAT GATGGTGTAGCAGCGGATGCATCAAGGATATCGAATGGAAGGACATTGATGAACGAGCATAATCTGCAGACGGATCACAATAACTTTGGCTCCTTGGAAG ATGTAGCTACTGGTTTTATGGTCACCCGGCACCCAACCAGCTCTAACAAGTAA
AA sequence Show only first row Show all	>Lus10005340 pacid=23154604 polypeptide=Lus10005340 locus=Lus10005340.g ID=Lus10005340.BGIv1.0 annot-version=v1.0 MTVEQGENRDQFPIGMRVLAVDDDLTCLLVLETLLRKCQYHVTTTSQARMALTMLRERRNDFDLVISDVHMPDMDGFHLLEKVGLEMDLPVIMLSANSDP KVVMKGITHGACDYLLKPIRIEELKNIWQHVVRRKKTDNRDKNNSDNRDNKSNSQSGEATSEQKLNKKRKDQIDEEDEDSDDNGNDYDDPTSQKKPRVVW SVELHRKFVSAVNHLGVDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISTVANQQANMAAALVSSDASYLQMGPLTGLGLHNVAGNGQFQNGGFR SVTPNGMLGRLNSPAGMSFHGLPSPGMMQVAHGQTGGHLASQNQFQSVISNANVLQGMPVSLELDQIQPNKGLNYMREIPTAIESTSGFADTSMAVGSSN GSFVGASSDKSLFPDRRRLQGTQPDAKFSKQTSLIGSSLDQGFSLDPGRCNESWTNAAPSTGVQSNSLIINDSFRTGGLPASNILRDNMSTMTMQTRSRQ CEVSPLSMLPLHLQDEKADLGCRLVSASSGGVGEIISSWDNNRQASPYYFNAASSSGNSSILDDVINQRWDANCNAMLQRNPSFGSTGQSSFIDSSLVKH DGVAADASRISNGRTLMNEHNLQTDHNNFGSLEDVATGFMVTRHPTSSNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	0	1
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	1.0	0.8822
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	2.2	0.8549
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	2.6	0.8503
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	3.0	0.8566
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	4.1	0.8202
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	4.7	0.8758
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	5.4	0.8017
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	6.0	0.8550
AT5G26770			unknown protein		Lus10031444 [exp]	7.9	0.8496
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	8.1	0.8541

Compare expression of checked genes

Lus10005340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.