Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 366 / 2e-107 transmembrane receptors;ATP binding (.1.2) AT5G36930 359 / 8e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 357 / 1e-104 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 343 / 1e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 335 / 2e-96 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 320 / 2e-91 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 307 / 2e-87 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 293 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 291 / 3e-82 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 289 / 9e-81 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020536 [exp] 1187 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1173 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 1173 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 1170 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 1128 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10020534 [exp] 1001 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 932 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 870 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 857 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 422 / 2e-131 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 421 / 5e-129 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 426 / 7e-129 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002066 [exp] 419 / 2e-128 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 418 / 8e-128 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 418 / 1e-127 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 416 / 6e-127 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 411 / 8e-127 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 415 / 1e-126 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 413 / 1e-126 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005373 pacid=23148523 polypeptide=Lus10005373 locus=Lus10005373.g ID=Lus10005373.BGIv1.0 annot-version=v1.0 ATGAAATCCGAATCTGAGAGCTCCTCCTCCGTGGTGGACCCGTCACTCGTCCCTCCTCCACCGGGAGAGTACGAGGTTTTCGTGAGCTTCAGAGGGGGAG ATGTCCGCAAAGATTTTGCGGACCATCTCTACAACTACCTCACGACTATGAAAATCCGCGCATTTCGTGACGAGGAAGAGCTCCCGAAAGGGGAGTTCAT CGCTCCGGCTCTGACCGAAGCTATTTCCGAATCCAAGGTCTACGTCCCGATCTTCTCGCTGCACTATGCTGGAAGCAAGTGGTGCCTTCAGGAGCTGGCT CAGATGGTGGAGTGCTGGAAGGCCGGGCAGGGAGGGAAGGGACAGCCGATTTTCCTCCCTGTTTTCTATAAGATTGACCCGAGATGTGTGAGGCATCCTG AGATTGAGCCTTACAAGGCGGCGTTTGAAGAACACGACCGGAAGCACGACGCTCGAACCGTGTCGAAATGGAAGGAAGCACTCCAAGTGGTTGGTCAAAT GAAAGGATGGCACATCACTGAGTTAGATGAACAAGGAGCGAAAATAGGAGAAATATTTTCCAAAGTTGAGAAGCATCTAAGAGCTCATTATACATTAGTG ACAGAAGAGTTAGTGGGAATCGATTTCCACGTACAAAAAGTTATGGAAAAGTTGAATCTAGAGTCAGTTTCAGCAAGTGAGAAAATTGTTGGGATTCATG GTATGGGCGGCCTTGGTAAAACTACTTTGGCAAAGGTTGTCTATGACAACGTATGTATGCAGTTCGAGCGTTGCTGCTTTGTGGAAAATATAAGAGAATC GTTAGTAAAAACCGACGGGATATTAACTCTACAAAATAAGATCATCTCTGACATTTTGAAGAAAGATTCCAACCAAGCTAAAAATGCTAGCGACGGAATT CGAATGATGAGGGAAAGAGTCTCCAAGCATAAACTTCTTATCGTTCTTGATGATGTAGATGGAACGTTCAAATTTGATGATGTCTTGGGGGGACTAAACT GCTTTTCTGCGGATAGTCGATTTCTTATCACTACAAGAGACGCTAGAGTTTTTGAACTCCTTCAAGCTCATCAGGTGTACGAGCTTGGAGAAATGAGTCA CCATCACGCCCTGAAACTTTTCAGCAAGCATGCTTTTCGAATGGATTTCCCTCCAAAAGCTTATGCAAGTCTGTCTATGGAATTTGTAAAAGTCGCAGCG GGGCTACCTCTATATCTCAAGGTCATAGGGTCCCTTTTGTTCGAAACAGAGAAAAGTTTCTGGGAAGCTACGTTGGAAGAGCATCAAGGAATACCTCCGA CCGAGGTGCAGGAGAGATTGAGGATAAGTTATAGGGTGTTGGACCGTAAGGAGCAACATATATTTCTTGATATTGCTTGTCTTTTCGTCGGAGAAAAGAA AGAAGCACCGATACACATGTGGAGTGATTGTCGTTTTAGTCCCGCAACTACGATTAGTACTCTTGTTAAGCGGTCACTCGTTAGAATCGACGACGACAAC AAGTTTCAGATGCACGATCATGTTAGAGATCTTGGTAGGGCTATTGTTCGTGAAGAAAGTGATTCAAATCCATACGAGCGCAGCAGGATATGGTCCAACA AAGATGCCATCAACATGCTAAAATACAAAACGGGAACATCTAGTGTGCAAGCTCTGGAAGTGAATATGAAAGGTGAAGATCAAGTTCTCACAGACAAAGA ATTCAAAAATTTATTGATGTTAAGGTTTCTCATGGTGTACAATGGAAGACTGGCTGGAAATTTCAAAGAGGTTCTTCCAAATTTATGTTGGCTAGGACTG ATCAACTGTGACTCAGTTCCCTCTTATCTTAACCTGAAGAAGTTGGTTGTTCTGCAATTTGAGGAGTCCTCTCTTGGAGATAGCTGGAAAGGGTGGAATG AACTCAAGGTAGCACCAAATTTGAAAGTCGTGTCTCTAAAGGGATGCTTCAACCTAAAAGAAGTTCCAGACCTGTCCAATTGCAGAGCTCTAGAGGTTCT AGACTTCAGGGAATGCCCCAAGCTGCGCGGCGAGCTCGACATACGAAACCTGACGAATCTGAAACTCCTCGGGATCTCCAAGACCAAGATATCAAAGATA AAAGGCGATATCGGAAGGTTAGAGAATCTCCAACACCTTGATGCTAGCCAGTCCAGTCTGGTAAAAGTTCCCTCTGGAATTAGCAAGCTATCATATCTCG AAATTCTGAAGCTGAAACTAACTCCTCCCAACAAGTTGGAAATGACAGAGAAATTTCCAGACAGCTTAAAGACCCTTACCATCTCATCTTCTTACCTTTC TGCTCTCCCGTCGTCTCTGACCTACCTTGAGAGTTGCTACTGCGAGGCTCTACCGAATCTCTCGAACGCCACGAATCTGCTGCAGCTATATTTGAGAAAC GTCGAGATTCGTGAAGTTATCGGTCTGGGAGAGCTCAAGCTTCTGGAAACTCTGGTGATCGAAAAAGCTCCAAAACTTTATAATTTGGACGGTCTCGAGA ATCTGTCTTGTCTCGAAGAATTGAGAGTAGAAGGATGTCCTGTCCTGGCAAAATTACCCAGTCTAGCAGGTTTGACCCGGTTAGAGGTGCTCGAGATAGA AAACTGTCCGGTTCTGACCGGAATCCATGGCGCGGGAGAGCTTTGGGACACCTTATTAGTTATAGAGGTACGCGAGTGTTCGAGCTTAACAGGTTTCAAG GCACTCCACTCCATGTTGAAATTGGAATCTTTGGTACTCATGGGAACGGAGTTAACCGATTCGGTCCCGCCTTCACTGTCTTTGTTCACCAAACTCAGGA GGCTAGCTTTATGTAACATGTCGCTGGTGCATTTCCCCGACCTCTCTAATCTCAAGAATCTGAGGGAGTTGTGGATTAAATATTGCGAAGAACTGACAGA GGTTCCTGGCCTGGGTACGTTGGTGTCGTTGGAATTCCTGAATATGGAAGGGTGCCGGTCGATTAGGGAATTACGGGGTTTGTCTGGCCTCGTGAATTTG AAGACGTTACAAGTTAACGGGTGCGAACAGTTGACCGAGGTCAGGGGCCTCGGGAACCTAGAGTCGTTGGAATACTTGGATATGTCGGGTTGCAAATCGA TCAGGGAGTTGCCGAATCTATCTGGTTTGAAGATTTTGAAGAAGTTACAAATTAAGAAATGCAAAGAATTGAAGGAGCTGAAAGGGTTTGATAAATTGGA GTCGCTACACCTTTTCGAGGCGGATACGAGGTTGAAGGTGAAGTATGCGCTGTGGTATGGGATGCATTAG
AA sequence Show only first row Show all	>Lus10005373 pacid=23148523 polypeptide=Lus10005373 locus=Lus10005373.g ID=Lus10005373.BGIv1.0 annot-version=v1.0 MKSESESSSSVVDPSLVPPPPGEYEVFVSFRGGDVRKDFADHLYNYLTTMKIRAFRDEEELPKGEFIAPALTEAISESKVYVPIFSLHYAGSKWCLQELA QMVECWKAGQGGKGQPIFLPVFYKIDPRCVRHPEIEPYKAAFEEHDRKHDARTVSKWKEALQVVGQMKGWHITELDEQGAKIGEIFSKVEKHLRAHYTLV TEELVGIDFHVQKVMEKLNLESVSASEKIVGIHGMGGLGKTTLAKVVYDNVCMQFERCCFVENIRESLVKTDGILTLQNKIISDILKKDSNQAKNASDGI RMMRERVSKHKLLIVLDDVDGTFKFDDVLGGLNCFSADSRFLITTRDARVFELLQAHQVYELGEMSHHHALKLFSKHAFRMDFPPKAYASLSMEFVKVAA GLPLYLKVIGSLLFETEKSFWEATLEEHQGIPPTEVQERLRISYRVLDRKEQHIFLDIACLFVGEKKEAPIHMWSDCRFSPATTISTLVKRSLVRIDDDN KFQMHDHVRDLGRAIVREESDSNPYERSRIWSNKDAINMLKYKTGTSSVQALEVNMKGEDQVLTDKEFKNLLMLRFLMVYNGRLAGNFKEVLPNLCWLGL INCDSVPSYLNLKKLVVLQFEESSLGDSWKGWNELKVAPNLKVVSLKGCFNLKEVPDLSNCRALEVLDFRECPKLRGELDIRNLTNLKLLGISKTKISKI KGDIGRLENLQHLDASQSSLVKVPSGISKLSYLEILKLKLTPPNKLEMTEKFPDSLKTLTISSSYLSALPSSLTYLESCYCEALPNLSNATNLLQLYLRN VEIREVIGLGELKLLETLVIEKAPKLYNLDGLENLSCLEELRVEGCPVLAKLPSLAGLTRLEVLEIENCPVLTGIHGAGELWDTLLVIEVRECSSLTGFK ALHSMLKLESLVLMGTELTDSVPPSLSLFTKLRRLALCNMSLVHFPDLSNLKNLRELWIKYCEELTEVPGLGTLVSLEFLNMEGCRSIRELRGLSGLVNL KTLQVNGCEQLTEVRGLGNLESLEYLDMSGCKSIRELPNLSGLKILKKLQIKKCKELKELKGFDKLESLHLFEADTRLKVKYALWYGMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10005373 [exp]	0	1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	12.2	0.7517
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	14.8	0.6661
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	16.5	0.6710
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	17.3	0.6759
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	27.3	0.6651
AT2G39580			unknown protein		Lus10029459 [exp]	31.5	0.6695
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	35.9	0.6479
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	43.6	0.6490
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	54.1	0.6594
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	55.3	0.6444

Compare expression of checked genes

Lus10005373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.