Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 691 / 0 AAA-type ATPase family protein (.1) AT5G45720 662 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 275 / 6e-77 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 268 / 8e-75 AAA-type ATPase family protein (.1) AT4G24790 240 / 2e-66 AAA-type ATPase family protein (.1.2) AT1G21690 52 / 1e-06 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015234 [exp] 1502 / 0 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 874 / 0 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 858 / 0 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 277 / 3e-77 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10013665 [exp] 243 / 3e-67 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10033035 [exp] 242 / 3e-67 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 179 / 1e-45 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10018144 [exp] 45 / 0.0002 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 44 / 0.0007 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071300 [exp] 920 / 0 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 803 / 0 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 291 / 2e-82 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 286 / 1e-80 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 263 / 6e-74 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 246 / 6e-68 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G181300 [exp] 56 / 8e-08 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10005422 pacid=23182250 polypeptide=Lus10005422 locus=Lus10005422.g ID=Lus10005422.BGIv1.0 annot-version=v1.0 ATGACCAAGCCTGTTAGAACTAGTAGGATCCTCAAGGATGCAAATGGTGTTGACATCAACGACCATCTTCGCAACCACATCCACTTGACCAATTGCATCC ACCTCAAGAACCATATCCATAAGCAAACCCCTACTATGTTATTAGGCGACCGGTCCTTGGTTCGAGACCTCATTGTTCTTCAGAGGTCGCGATCATTGAA GGACCCTTCCGCGAGCCCTCCTCGTCCTCCTTCGTGGCAACATTCGACCCCAGTTGTGGTCAAATCGTTGCCCATGAAAGGCGACCAGGATCAGCACGTT GTTCATCCAGGTAGTAGTAGTAGCAGGAGGTTGTCTGGCGGTGGTAACTCGATGCATTATTCGAGCCATCCGTTGTCTGCGAAGGTTGTTCCTGATGATG GCATTTCGGGGGATTCCGGATGGAAAGATGGGAGGAGTAGAAGGAAGGCGAAGAAGGATAGTGAAGATGTACATATGGATAGTGATGTAGCATCATCATG TTCTAAGATCCATCATAAGGGTAAAACCGAGTCAAGAAATCGTGGATATGGTCGAGTTAGTCGGGTTAAGAGCAGGAGTAGGGGCGGTGGTGCCAGACAG AGTCGTGTTTCAGCTTCTAGAGACAATGCAGGTCGGAAAGAGATGTCTATCGGTTCGAATTCGTTAGCTCGAAGTTCAGTATGGCCGAGGCATCACATGG ATAATCAGGAGGAGGACAGAGAAGAAGATTTATATGGTGATCAGGACGTGACACAAGATCCACGAAACAGATGTGGGATTCCGTGGAATTGGTCGAGAAT TCACGGTCGTAGTAGAACGTTTTTCGACAGGGCGGGAAGGAGCCTGTCCTGTGGTCTCTCGGAGTCGAGGTCAAGGCGAGGTAGTAGGAACATTGATGAT GATGACACGGTGATGCTATCCGGTCAATCGAGTTCCGAATCTCGGTCTGGTTCAGGTGGTTGGGTTCATGATTATTCCGGTGAGCTTGGTTTCTATGCCG ATAGCTTGCTGAGCAAGAAAGACAGCCAGAATCAGAATCTCAACTGCAGGCATCAGAATCTGACACAGAAGTACATGCCTAGATTCTTTAAAGACCTGGT CGGACAGAATCTTGTCTGCCAAGCTCTTTCCAATGCAGTAATCCGCAGGAAAGTCGGATTCTTGTACGTGTTTTACGGACCTCATGGCACCGGAAAAACC TCTTCCGCTCGAATTTTCGCTCGAGCTTTGAATTGTCAGTCCATGGAGCCACCTAAACCATGTGGCAATTGCAACTCTTGCAACGAAACCGGTAAAAACC GATACATTCGAGAAATCGGTCCATCAAGTAATTTCGACTCCAAAACCGTCATGGACCTTCTTCGCAATGTGATCACATCTCATCACTACAAAGTTATAAT CTTTGATGATTGCGATGCATTATCCCCCAATTGCTGGACCGCAATATCGAAGGTCGTCGATCGAGCTCCTAGACGAGTAGTTTTCGTTCTCGTAAGTTCG AGTCTCGATGCTTTGCCTCACATGATCATATCTAGGTGCCAGAAATTCTTCTTCCCAAAGGTGAAAGATGCAGACATTGTATCCACTCTGGACCGAATTT CGGCCAGAGAAGATATCGACATCGACAAGGACGCGTTGAAACTGATCGCTTCGCGTTCAGATGGATCGCTGAGAGATGCCGAGATGACTCTCGAGCAACT CTGCCTCCTCGGACAACCGATCTCCGTGTCTCTAGTTCAAGAGCTGGTTGGGCTGATTTCGGACGAGAAGTTGGTCGATCTTCTCGACATGGCGTTGTCG GCAGACACAGTGAACACTGTCAAGAGTTTACGGGTCGTTATGGAGGCCGGAGTCGAGCCTTTAGCTCTGATGTCTCAACTTGCTACTGTTATAACTGATA TCTTAGCTGGTTCATATGATTTCACCAGAGAGAGACATAGAAGGAAGTTCTTCAAACGACAACCGATGTCGAAGGGGGAAATGGAGAAGTTGCGACAAGC GTTGAAGACTCTATCGGAGGCCGAGAAGCAACTCAGGACATCGAACGACAAGTTGACATGGCTTACCGCTGCATTGCTTCAACTCGCGCCCGATCAACAG TACTCGACTGAAGCACCTGGTTCGGGTAATTTTTCTGGAAGTAGAACGAAAAACGGTACCGACATGGATAGGAAGAGGAACTCCGTGTCTTCTAATGCAG CTAGGGCGACGACTGAGAAGCCGGTTCCAAGCCAGAGTCGAATCGGATATGACGAAATTTGGGTTGACGTGATTGAGAAGATTCAGATCAAGACTATAAA AGAGTTCTTGTACCATGAAGGAAAACTGGTTTCTATCAGTTTTGGTACCGAACCAACGGTGCAGTTGATGTTTACCTCACAGCTTACGAAATCGAAGGCG GAGAAGTTCATGACCTACATTTTACGAGCGTTCGAATTGGTTCTTGGGTCGGCAGTGACGATCGAAATCAGAACCGAACCGAACAGCAAAGGCAGACAGA CACCACTTGTTTTACCTCCTGCCTCCAAGAATGTTCCATTGCAAGTAGCTATAGAACGCGGTACCAGGCCGCTAGAAGAATCTTTCGATACCAATAGAGA TGAGATTGTTGAAGTACCGGCCCGAGCAACAAGTTCCTCTGCAGCGGGTACGAGAAATGGAGAAGTTAACCAATGCCGGAGCCTGGTAAAAGGCAAGGTG TCTTTAGCTGCTGTGATTCAGCAGGTCGAAGGGTTTACGCAACCGGATAGATGGTCGAGACGGAAACCGATCACGATAGCTGAAAAGATCGAACGAGAAA ACTTGAGAATGGAGGCTAGATCGCGAAGCACGCTTTGCTGGAAAGCATCGAGGGTGACTCACAGGAAGGTAGAGCAACGAATCTCGAAACTTACCGCCCA AGTTTCAACTTCCACTATGATCGTTCTCGTGCCTTGTCGGTACATCATTCAATTTGTCGATTCCGGCCACTATGTTAACGAAATGTTCTTGCTTTGCAGC TTTCTCGTTCGAAGACCAGGAAACGAAGGCCGCAACCACTGCTGA
AA sequence Show only first row Show all	>Lus10005422 pacid=23182250 polypeptide=Lus10005422 locus=Lus10005422.g ID=Lus10005422.BGIv1.0 annot-version=v1.0 MTKPVRTSRILKDANGVDINDHLRNHIHLTNCIHLKNHIHKQTPTMLLGDRSLVRDLIVLQRSRSLKDPSASPPRPPSWQHSTPVVVKSLPMKGDQDQHV VHPGSSSSRRLSGGGNSMHYSSHPLSAKVVPDDGISGDSGWKDGRSRRKAKKDSEDVHMDSDVASSCSKIHHKGKTESRNRGYGRVSRVKSRSRGGGARQ SRVSASRDNAGRKEMSIGSNSLARSSVWPRHHMDNQEEDREEDLYGDQDVTQDPRNRCGIPWNWSRIHGRSRTFFDRAGRSLSCGLSESRSRRGSRNIDD DDTVMLSGQSSSESRSGSGGWVHDYSGELGFYADSLLSKKDSQNQNLNCRHQNLTQKYMPRFFKDLVGQNLVCQALSNAVIRRKVGFLYVFYGPHGTGKT SSARIFARALNCQSMEPPKPCGNCNSCNETGKNRYIREIGPSSNFDSKTVMDLLRNVITSHHYKVIIFDDCDALSPNCWTAISKVVDRAPRRVVFVLVSS SLDALPHMIISRCQKFFFPKVKDADIVSTLDRISAREDIDIDKDALKLIASRSDGSLRDAEMTLEQLCLLGQPISVSLVQELVGLISDEKLVDLLDMALS ADTVNTVKSLRVVMEAGVEPLALMSQLATVITDILAGSYDFTRERHRRKFFKRQPMSKGEMEKLRQALKTLSEAEKQLRTSNDKLTWLTAALLQLAPDQQ YSTEAPGSGNFSGSRTKNGTDMDRKRNSVSSNAARATTEKPVPSQSRIGYDEIWVDVIEKIQIKTIKEFLYHEGKLVSISFGTEPTVQLMFTSQLTKSKA EKFMTYILRAFELVLGSAVTIEIRTEPNSKGRQTPLVLPPASKNVPLQVAIERGTRPLEESFDTNRDEIVEVPARATSSSAAGTRNGEVNQCRSLVKGKV SLAAVIQQVEGFTQPDRWSRRKPITIAEKIERENLRMEARSRSTLCWKASRVTHRKVEQRISKLTAQVSTSTMIVLVPCRYIIQFVDSGHYVNEMFLLCS FLVRRPGNEGRNHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	1.0	0.9533
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	1.4	0.9508
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	1.7	0.9444
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	2.8	0.9402
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	3.2	0.9361
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	3.5	0.9274
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	3.7	0.9252
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	6.9	0.9242
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	7.2	0.9056
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	8.4	0.9217

Compare expression of checked genes

Lus10005422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.