Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25960 95 / 6e-24 Protein of Unknown Function (DUF239) (.1) AT2G44210 92 / 9e-23 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G25950 91 / 2e-22 Protein of Unknown Function (DUF239) (.1) AT5G18460 91 / 4e-22 Protein of Unknown Function (DUF239) (.1) AT1G55360 83 / 2e-19 Protein of Unknown Function (DUF239) (.1) AT2G44240 82 / 4e-19 Protein of Unknown Function (DUF239) (.1) AT5G56530 82 / 5e-19 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 82 / 7e-19 Protein of Unknown Function (DUF239) (.1) AT5G50150 81 / 1e-18 Protein of Unknown Function (DUF239) (.1) AT3G13510 79 / 5e-18 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007458 [exp] 250 / 1e-83 AT2G44210 266 / 2e-85 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Lus10004766 [exp] 88 / 5e-21 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 86 / 3e-20 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 77 / 3e-17 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 77 / 3e-17 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 69 / 2e-14 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 69 / 2e-14 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 69 / 4e-14 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 64 / 1e-12 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233600 [exp] 161 / 1e-48 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 109 / 3e-29 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 88 / 4e-21 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 86 / 2e-20 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 83 / 2e-19 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 83 / 3e-19 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 82 / 5e-19 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 81 / 1e-18 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 78 / 1e-17 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 77 / 3e-17 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10005502 pacid=23182572 polypeptide=Lus10005502 locus=Lus10005502.g ID=Lus10005502.BGIv1.0 annot-version=v1.0 ATGATGACTGGGGGTTACAGTTACTCAGGGGTGAAAGGCAACATTCGAGTTTGGAACCCTCACGTCGAAGACGACGACTGCTCCCTTTACCACGTCAGCC TTGTCAGTGGCGGCATCTACGACTTCGAGACCATTCGCTCCGGCTGGTCCGTCAATCCCAAATGGTACGGGTATACTCAAACTCGCCTTTTTGTCTATTG GACGGACCCGGTGACGGGGAACTGGTGGGTGGAGTACGGAGAGAATGTTTACCTTGGATACTGGCCGCGTGGACTGTTTACTTTGCTAGCAGCTGGAAAT GCACAGTCTGCTGAGTGGGGAGGGGAAGTTTACAGTACACAATTGGGCAAGGCACCGCACACGACAACTGGAATGGGGAGCGGGAGTTTCGCTGACCATA TATCTGGTGGTCAACATTTTCTCCGATGA
AA sequence Show only first row Show all	>Lus10005502 pacid=23182572 polypeptide=Lus10005502 locus=Lus10005502.g ID=Lus10005502.BGIv1.0 annot-version=v1.0 MMTGGYSYSGVKGNIRVWNPHVEDDDCSLYHVSLVSGGIYDFETIRSGWSVNPKWYGYTQTRLFVYWTDPVTGNWWVEYGENVYLGYWPRGLFTLLAAGN AQSAEWGGEVYSTQLGKAPHTTTGMGSGSFADHISGGQHFLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44210			Protein of Unknown Function (D...		Lus10005502 [exp]	0	1
					Lus10018299 [exp]	1.0	0.7195
AT5G47570			unknown protein		Lus10008504 [exp]	12.8	0.7038
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	14.5	0.6626
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	21.7	0.6256
					Lus10027007 [exp]	26.9	0.6580
AT5G63135			unknown protein		Lus10019491 [exp]	34.1	0.6969
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	36.2	0.6698
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10043176 [exp]	38.5	0.6924
					Lus10012012 [exp]	39.0	0.6642
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	91.7	0.5887

Compare expression of checked genes

Lus10005502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.