Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16060 200 / 2e-61 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 193 / 6e-59 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G57390 153 / 1e-41 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT3G54320 149 / 3e-41 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G17430 151 / 5e-41 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 148 / 6e-41 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 149 / 4e-40 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 148 / 6e-40 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 139 / 1e-36 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT2G41710 124 / 9e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001553 [exp] 510 / 0 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10024101 [exp] 266 / 1e-86 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 258 / 2e-83 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10008939 [exp] 162 / 2e-45 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 160 / 7e-45 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 158 / 2e-44 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 159 / 3e-44 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 158 / 3e-44 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 158 / 5e-44 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102200 [exp] 338 / 4e-115 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 311 / 6e-105 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G185300 [exp] 306 / 1e-102 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 252 / 3e-81 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 163 / 1e-46 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 160 / 2e-45 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G091600 [exp] 154 / 4e-42 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 153 / 8e-42 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.010G181000 [exp] 153 / 4e-41 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 152 / 1e-40 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10005513 pacid=23177344 polypeptide=Lus10005513 locus=Lus10005513.g ID=Lus10005513.BGIv1.0 annot-version=v1.0 ATGGCCAAACTGTCGCAACAGAAAGGCAGCATTAGTAGCAACGGTCAACAGTTAGGGGTCAACAAAAGTATTCCATCATCATCCGCTAATGGCGTCACCA AGGTAAAGAGGACCAGGCGAACCGTGCCACGTGACTCTCCGCCCCAACGTAGCTCCATCTATCGAGGCGTTACAAGGCACCGATGGACCGGCCGGTATGA AGCTCATTTGTGGGATAAGAATTGTTGGAATGAGTCTCAAAACAAGAAAGGACGGCAAGGTGCTTATGATGATGAAGAAGCCGCAGCTCATGCTTATGAC TTAGCAGCTCTCAAGTACTGGGGTCCTGAAACCATACTTAACTTTCCGTTGGCGACATATGACAAGGAGCTGAAGGAAATGGAAGGACAGTCAAGAGAGG AGTACATTGGGTCACTCAGGAGGGGGACTAAAGCTAATTCAGAACTTCATTGCTTTCCAGGAAAAGCAGTGGGTTTTCTCGTGGTGTTTCCAAGTACAGA GGGGTTGCCAGCTACCCAAGAAGAAGCTGCCACCGCATATGATATGGCAGCAATCGAGTACCGTGGCCTTAATGCCGTTACTAATTTTGATCTGAGCCGT TATATTAAGTGGCTGAAACCTAAACAAAATGTTCCAAATCAATTAGCTACTGAAAACCCTAACCCTATACCAACATTAGGCGCAAACCCTAGCCATGAGC TTGGGTTCAACTTCTTCCAAACCCAACCACCTCAAGATCAGCAACAAACTTTTCAGCCGATTGAGCCAACTCCATCCACGACAGTCGTCCAGCCGAGATC GTCGATCAATACCAAGTCAGCTTTAGGGTTGTTGCTCCAATCCTCTAAATTCAAGGAGATGATGGAGATGACATCAGTAGTGGATCGCCCTTTAACTCCC ACAAATCTTGACCTTGAACCTTCACAATGCAGCTTTCCCGAAGATATTCAGACCTACTTCGGGTCTCAGGATTCGAGCAATTATGAAGAAAATAGTGACA TGATATTCGGCGACATTAACTCGTTCGTACCACCGATGTTCAATTGTGATTTCAACGCATGA
AA sequence Show only first row Show all	>Lus10005513 pacid=23177344 polypeptide=Lus10005513 locus=Lus10005513.g ID=Lus10005513.BGIv1.0 annot-version=v1.0 MAKLSQQKGSISSNGQQLGVNKSIPSSSANGVTKVKRTRRTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYD LAALKYWGPETILNFPLATYDKELKEMEGQSREEYIGSLRRGTKANSELHCFPGKAVGFLVVFPSTEGLPATQEEAATAYDMAAIEYRGLNAVTNFDLSR YIKWLKPKQNVPNQLATENPNPIPTLGANPSHELGFNFFQTQPPQDQQQTFQPIEPTPSTTVVQPRSSINTKSALGLLLQSSKFKEMMEMTSVVDRPLTP TNLDLEPSQCSFPEDIQTYFGSQDSSNYEENSDMIFGDINSFVPPMFNCDFNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	0	1
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	1.4	0.9277
					Lus10008896 [exp]	1.7	0.9255
AT2G37530			unknown protein		Lus10024416 [exp]	4.8	0.9328
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10001553 [exp]	6.6	0.9244
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	9.8	0.9149
AT5G19970			unknown protein		Lus10019451 [exp]	11.6	0.9188
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	13.4	0.9086
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	16.1	0.9126
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	16.7	0.9061
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	17.9	0.8776

Compare expression of checked genes

Lus10005513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.