Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17120 679 / 0 CAT8 cationic amino acid transporter 8 (.1) AT2G34960 600 / 0 CAT5 cationic amino acid transporter 5 (.1) AT4G21120 521 / 8e-180 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 310 / 6e-98 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 302 / 9e-95 CAT7 cationic amino acid transporter 7 (.1) AT5G36940 147 / 1e-37 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 147 / 2e-37 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 146 / 2e-37 CAT9 cationic amino acid transporter 9 (.1) AT1G58030 137 / 5e-34 CAT2 cationic amino acid transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023271 [exp] 514 / 1e-176 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 511 / 2e-172 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 451 / 5e-152 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10000962 [exp] 306 / 3e-96 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10040142 [exp] 306 / 7e-96 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10028195 [exp] 182 / 5e-50 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10013705 [exp] 159 / 8e-47 AT1G17120 107 / 7e-29 cationic amino acid transporter 8 (.1) Lus10042898 [exp] 172 / 2e-46 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10003697 [exp] 157 / 2e-41 AT4G21120 416 / 2e-140 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378500 [exp] 747 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.003G154600 [exp] 604 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.013G030900 [exp] 503 / 2e-172 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 503 / 2e-172 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 500 / 3e-171 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.015G133100 [exp] 493 / 2e-168 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.008G017100 [exp] 321 / 7e-102 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.001G150700 [exp] 314 / 3e-99 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 303 / 4e-95 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 297 / 6e-93 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10005574 pacid=23139643 polypeptide=Lus10005574 locus=Lus10005574.g ID=Lus10005574.BGIv1.0 annot-version=v1.0 ATGCCTCAAAACCCCTCATCACCCAAATCCTCATCACAGTCGCCATTGCTCTCACCCGCCGCCGACCACCATTCAACAGCGATGGATTCCACCAACTCCC AACAACAAGCAACCAGTTACTGGCGATGCAGCAAGGACGACTTCTTCCCTGAACCCTCTTTCAGAAACTGCTCCACTTACAGAGCGGCGCTCTGCCAAAC CCCCCGCCGTCTCAAGGAGCGGATCCTCTCCCGATCCTCCGATGAGAACGAGCTCGTCAATCTTCCCCAAGAGAGCCGCAACCCTATGCTGAAATGCCTC ACCTGGTGGGACCTCATGTGGATGAGCTTCGGCTCCGTCGTCGGCTCCGGCATATTCGTCATCACCGGCCAGGAAGCCCGTAACCATGCCGGCCCCGCAA TCGTCCTATCCTACGCCGTCTCGGGACTCTCCGCGCTCTTATCAGTCCTCTGCTACACCGAATTTGCCGTCGAGATTCCCGTCGCCGGTGGATCCTTCTC TTTCCTTAGAATCGAATTGGGCGATTTTGTTGCATTCCTCGCCGCCGGGAACATTCTCCTGGAAGGAGTTGTCGGTGCCGCCGGATTGGGTAGGTCTTGG TCGTCCTATTTTGCTAGCATGATTAATTCCGACAATCCTGATTTCTTGAGGATTCGAATTCAGGGGTTTGCTGAGGGTTTCAATTTGCTTGATCCTTTAG CTTTTCTTGTGCTCTGGGTTTCTAATGGCATTGCAATGAGTGGGACGAGTAGGACATCTTTGCTTAATTGGATTAGTTCAGTTCTTAGTGCAATGTTGAT TGTTTTCATAGTAATCGTCGGATTCATCCATGGCAAAGCTTCCAACTTGACACCATTTTTCCCCTATGGAGCAAAAGGTGTGTTCAATGCTGCAGCAGTT GTGTACTGGTCTTACACAGGGTTCGACATGGTCGCTACGATGGCCGAAGAAACCAAGAAGCCTTCGAGGGACATCCCGATCGGATTGATCGGATCCATGT CCATGATCACCGTGGTTTATTGCTTGATGGCTTTGGCGCTGACAATGATGGTTAACTATACGAGAATCGATCCGAATGCAGCCTACTCGGTTGCCTTCTC GCAGATCGGTTTGGGTTGGGGGAAGTACTTGGTGAGCATATGTGCTTTGAAGGGAATGACCACTAGCTTACTCGTTGGATCGCTAGGACAAGGCCGGTAC ACGACTCAGATTGCGAGATCCCACATGATTCCGCCATGGTTCGCTCAAGTTCACCCCAAGACGGGAACGCCTATCTACGCAACCCTCTTGGTGACCACGT TAAGCTCCGTGGTTGCCCTTTTCTCGAGCTTGGATGTGTTGTCAAGCGTGTTCTCGTTCAGCACGCTTCTCATTTTCATGCTAATGGCGGTAGCATTGTT GGTGAGGCGGTACTACGTTAGCAATGTCAGTTCGAGTGGCGATTTGGGGAAGTTCATGGCGTGCTTGTTGACCATCGTTGGTTCCGCGATAGGAATTACG GTGGTGTGGAGCACCGATAACGGAGGGTGGGTTGGGTATGGTGTTCCTTTGGCGGTTTGGTTATTGGGTACGCTCGGGATGTCAATGTTGCCAAAGCAAC GGGCTGCCAAGGTGTGGGGGGTTCCGGTGGTGCCATGGCTGCCGGCATTGTCGATCGGGATGAATGTGTTTCTGATCGGGTCGCTGGGTTACTTGGCGTT CGTGAGGTTCTTTGTGTGCAGCGCGGTAATGGTGGTGTACTACTTGTTGGTTGGTGTTCATGCGACTCATGATGTTGCTAACCAGGAGCAAGGGGAGACC AAGGTTGAGGATGATGCTATGACTTGTTAG
AA sequence Show only first row Show all	>Lus10005574 pacid=23139643 polypeptide=Lus10005574 locus=Lus10005574.g ID=Lus10005574.BGIv1.0 annot-version=v1.0 MPQNPSSPKSSSQSPLLSPAADHHSTAMDSTNSQQQATSYWRCSKDDFFPEPSFRNCSTYRAALCQTPRRLKERILSRSSDENELVNLPQESRNPMLKCL TWWDLMWMSFGSVVGSGIFVITGQEARNHAGPAIVLSYAVSGLSALLSVLCYTEFAVEIPVAGGSFSFLRIELGDFVAFLAAGNILLEGVVGAAGLGRSW SSYFASMINSDNPDFLRIRIQGFAEGFNLLDPLAFLVLWVSNGIAMSGTSRTSLLNWISSVLSAMLIVFIVIVGFIHGKASNLTPFFPYGAKGVFNAAAV VYWSYTGFDMVATMAEETKKPSRDIPIGLIGSMSMITVVYCLMALALTMMVNYTRIDPNAAYSVAFSQIGLGWGKYLVSICALKGMTTSLLVGSLGQGRY TTQIARSHMIPPWFAQVHPKTGTPIYATLLVTTLSSVVALFSSLDVLSSVFSFSTLLIFMLMAVALLVRRYYVSNVSSSGDLGKFMACLLTIVGSAIGIT VVWSTDNGGWVGYGVPLAVWLLGTLGMSMLPKQRAAKVWGVPVVPWLPALSIGMNVFLIGSLGYLAFVRFFVCSAVMVVYYLLVGVHATHDVANQEQGET KVEDDAMTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	1.0	0.8217
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	5.3	0.7860
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	6.0	0.7847
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	6.6	0.7667
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	7.7	0.7534
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	9.4	0.7457
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	12.5	0.7511
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	13.2	0.7467
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	14.7	0.7426
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	15.2	0.7242

Compare expression of checked genes

Lus10005574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.