Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 453 / 3e-139 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 450 / 2e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 410 / 1e-123 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 400 / 3e-121 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G36930 401 / 2e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44670 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 397 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G49140 389 / 7e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 390 / 2e-117 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 392 / 4e-117 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 1432 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000121 [exp] 642 / 0 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 530 / 1e-169 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 520 / 1e-165 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038249 [exp] 503 / 7e-160 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013729 [exp] 486 / 3e-158 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014829 [exp] 483 / 7e-153 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 485 / 2e-150 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 443 / 6e-136 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 684 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 672 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 621 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 596 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 583 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 553 / 5e-177 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 548 / 2e-175 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 532 / 1e-172 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 535 / 2e-167 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 525 / 3e-165 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005588 pacid=23139654 polypeptide=Lus10005588 locus=Lus10005588.g ID=Lus10005588.BGIv1.0 annot-version=v1.0 ATGGATCCATCCTTCATCTGGATTTATTTTCTTCTCCTGCTTCACTTGTTCATTTTCGTGTGGCAAATCTATCGCAAACCCCGGGCAGTTGACTCGTTTT CAGCAGCGTCAACTCTCTCCTCGTCCTCAGATTCTGGCAAAACTGAAGTAGCTCCAGTCATCCACAAGTACGACGTGTTCCTCAGTTTCAGAGGGGCAGA CACCCGCGGAAATTTCACCAGTCATCTCTACGCAGCTCTCAGAGGCCGCAGAATCCTGAGCTACATCGACGACGTCAACCTCCGGCGCGGGCAGGACATC ACCGATTCCCTCTTGAAAGCGATCGAGCATTCCAAGATCGCCGTCGTGGTGCTATCCGAGAACTACGCCTCTTCCGGATGGTGCTTGGATGAGCTGGTTA AGATCCTCCACTGCCGAAACCGATTCGATCAGGTGGTTTTACCGGTCTTCTATGGCGGCGTTACGTCGTCTCATGTTCGCAATCAGACCGGTAGCTACGG TGTTGCGTTCGCTAAGCACAGAATGTCTCCACCGGAGAAATTGAAGATATGGAGCGCGGCGTTGAAAGAGGTCGCCAGTATTCCCGGCTGCTATTCTCTC CAATCTAGAACAGATGCGGAACTCGTTAAAAAGGTCGTCGAGACCGTCTTAACGACGTTAAATGACGATCCCTCAACTCCTCAATTCAACGGTTTGGTCG GTATACAGACTCGAGTCGAGGAGATAGAATCCTTGTTGCATATGGAATCGGTCTCCGATACGAGGATTGTAGGAATGTGGGGGATGGGTGGCATTGGCAA AACCACTCTTGCTAGAGCTGTATTCGATCAGTTCTCATCTCGATTCGAAGCTTGCCATTTCCTAGGAAACGTCAGGGAAGAACTGGAAAGAGGCAGCACC GAACTCGCCTTGCAAGGAGAACTTTTCTCATGTATATTGGAAGATGATGATGATCTCACAACAACAAAACAAAGTACAAATTTAGCACTCACCTTTGCGA AAACTCGGCTCGCTCGAACCAAGGTCCTTGTCGTACTCGACGATGTTGAAGACCCGGTATCTTTGCACAACTTGTTAGACAAGCAACCACATACTCTTTT CGGTCCCGGGAGTAGGATAGTGGTGACAAGTAGGGATCACCAGGTTCTTCAGAATGTATGTGATGAGATATTCGAAGTCAAGGAACTGAACGACCACGAA TCGTTTCAACTCTTCACTTCAAATGCTTTTAGCAGCGATGATCCTTCGGAGGAATACTTGGGACAATCATGGAGAGCAATAAGTTATGCATCAGGCAATC CGTTGGCTCTTATAGTTCTAGCAAAAGCTCTGTTTGGGAGAAGTATTGAGTACTGGGAGAGTGTATTGCGTAGGCTACAAAGGATACCCAATCGAAAAGT TCAGAACATTTTGCGAATCAGTTATGATGGGCTAGATCGCGATGAGAAGAATGCTTTTCTTGACGTTGCATGCTTCTATAAAGGAGAGAGTCGAGATCAT GTCAAGTCCATGCTAGATGGCTGTTATGGAGATGGGTCTTCTGAGAATATCATAACATCACTCACAGACAGGTCTCTTGTAGACATGATCAGTGGCCGAG ATGGGTCAATAGTCATGATGCATGATTTGTTGAAGGATATGGGTCGAGGAATCGTGACAGAGGAATCGGATGATCCGGGAAAGCGCAGTAGGTTGTGGGA TCAAAATGATGTCTATGCCTTGCTTGCCAGAAGAGCGGGTACGAGAAGAACTAAAGGCATATCTGTGGAGTTGGCCGAGACAGAACAGATGATGCAGCTG GACTCGGATGCCTTTGCAGGGATGACTCGTCTAAGAGTCCTCAGATTCCACTTGCCGTACGGTGGCAACTGCAATTACCAGGCGATCCAGTTGCCGGAAG ATGGCCTTCAGTTTCTCTCCAATCAGTTGATGAGCTTCCATTGGCATCAATTCCCTTCCAAGTCTCTTCCGCCATCGTTTTCTGCAGAAAAACTCATCGA CCTTCGCCTCCCTTATAGCAACATACAACATCTTTGGACTGGTATACAGAATCTTGCCAGCTTGAAGTACATCAGCCTCAGCTACTGCACAAAACTGGTG CAGCTGCCTGACTTATCCATGGCTAAAAAAATTGAGGAAATTCATCTGATAGGGTGTGAAAGCTTAGTGGAGATCCCACCATATATTCAAGAGTTGGAGA ATCTAACAAACTTCAACGTTTGGAACTGTAGGAGTCTTCCCGAGCTTCCACACCGGTTCAAATCAAAATCCGTTGAATATATCTCTCTAGCTTCGGAAAC CTGCCCTGCTCTCACGAACTATGAGCAAGTACACTTTGGCCAACACGAAGACGAATGGATCGAAAGTGAACCTGAACAACATGTAGCAGCAGTGTTTGTC AGAGTTCTTCATTTCCACAATAGCTTGAACCTGAGAGACCTGCGTTTGGGTGGATCGGATATACAGGAGCTCCCACCGTCCATCGAGCTGCTCACTAATG TTGTCAACTTAGACATGTCCAAATCCAAGCATCTGCGCTACGTATCAACCAACATCTGCAAGTTAAGCAACCTCGAGAGTCTCGATCTGACAGGATGTGT GGCGCTAGAGACCTTTCCGGAGATCATGAAGCCAATGGAACAACTTTCTCGATTGTTTTTAGGCGGAACGTCTATCAGAGAGTTGCCCTCTTCATCCATT TACAATCTGGTTAACCTTCAATGGCTGGGGCTTAACAACTGTAGAAAGCTCCTTTGTCTTCCTGAAGTCATCCAGCTCTCTTATAAGCTGACTGGTTTGG ATATAAGGGACTGCAGTAGTCTTCGTTGTTTACCCCAGCTCCCGCAGTCCCTCGATACGTTGAACGCTGATGATTGCTCCTCACTATGCAGCTTACCGAG TAGCAGCTATCTATACAATCTCGGCTGTTCTCGATTTGCAAACTGCTTCCGGCTGGACCAGGACGCTCTGACTCGATGGATGCAGGAATCCTTTAAAATC CAGAGAACAGCAGCAGAGATGTATTTTCCAGGAAGCGAAGTCCCGGACTGCTTCGAGTATGCAAGCATGGGATCCGAGATAACTATACGGCTGGCATCAT CAGGAATGGGGGAGGTCGAATATGGCAGTAAAGGGATTGCATATTGTTTAGTTGTGGAACAGGATGATGGCCCTTACTCCTACCGCCCGGAGGATGACGA TGCTGACAGTACCGAGAAATACAGAGCCACGATGTCCCCACTCGAGTGCCACTGGAAGGTATCGTCTCCATGGTCGTCATCGACAGAAGCTGGGAGGTGG TATCACAATGCTTCGACCCGTGGATACCCACAGTTCAAGTCCGATCATCTGGTAATTCTTTACAGGGGGTGGGAACACGAGTGGTGGATGTTTGATAGGA GAAATGTGGGTCGTGAGATCACATTTGGGTTTCAGTTTACGTTTGGTTGGAAGGTGAAGAAAGTAGGGTTCATGGTTGTAGATTTCAGTTATGATGTCAG TTACGACGAGATGGATTGGACTGCAGGTGACGATTTCCGACTGTACGACTAG
AA sequence Show only first row Show all	>Lus10005588 pacid=23139654 polypeptide=Lus10005588 locus=Lus10005588.g ID=Lus10005588.BGIv1.0 annot-version=v1.0 MDPSFIWIYFLLLLHLFIFVWQIYRKPRAVDSFSAASTLSSSSDSGKTEVAPVIHKYDVFLSFRGADTRGNFTSHLYAALRGRRILSYIDDVNLRRGQDI TDSLLKAIEHSKIAVVVLSENYASSGWCLDELVKILHCRNRFDQVVLPVFYGGVTSSHVRNQTGSYGVAFAKHRMSPPEKLKIWSAALKEVASIPGCYSL QSRTDAELVKKVVETVLTTLNDDPSTPQFNGLVGIQTRVEEIESLLHMESVSDTRIVGMWGMGGIGKTTLARAVFDQFSSRFEACHFLGNVREELERGST ELALQGELFSCILEDDDDLTTTKQSTNLALTFAKTRLARTKVLVVLDDVEDPVSLHNLLDKQPHTLFGPGSRIVVTSRDHQVLQNVCDEIFEVKELNDHE SFQLFTSNAFSSDDPSEEYLGQSWRAISYASGNPLALIVLAKALFGRSIEYWESVLRRLQRIPNRKVQNILRISYDGLDRDEKNAFLDVACFYKGESRDH VKSMLDGCYGDGSSENIITSLTDRSLVDMISGRDGSIVMMHDLLKDMGRGIVTEESDDPGKRSRLWDQNDVYALLARRAGTRRTKGISVELAETEQMMQL DSDAFAGMTRLRVLRFHLPYGGNCNYQAIQLPEDGLQFLSNQLMSFHWHQFPSKSLPPSFSAEKLIDLRLPYSNIQHLWTGIQNLASLKYISLSYCTKLV QLPDLSMAKKIEEIHLIGCESLVEIPPYIQELENLTNFNVWNCRSLPELPHRFKSKSVEYISLASETCPALTNYEQVHFGQHEDEWIESEPEQHVAAVFV RVLHFHNSLNLRDLRLGGSDIQELPPSIELLTNVVNLDMSKSKHLRYVSTNICKLSNLESLDLTGCVALETFPEIMKPMEQLSRLFLGGTSIRELPSSSI YNLVNLQWLGLNNCRKLLCLPEVIQLSYKLTGLDIRDCSSLRCLPQLPQSLDTLNADDCSSLCSLPSSSYLYNLGCSRFANCFRLDQDALTRWMQESFKI QRTAAEMYFPGSEVPDCFEYASMGSEITIRLASSGMGEVEYGSKGIAYCLVVEQDDGPYSYRPEDDDADSTEKYRATMSPLECHWKVSSPWSSSTEAGRW YHNASTRGYPQFKSDHLVILYRGWEHEWWMFDRRNVGREITFGFQFTFGWKVKKVGFMVVDFSYDVSYDEMDWTAGDDFRLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	1.0	0.8551
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	2.8	0.7818
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	10.7	0.6575
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	13.4	0.6860
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	15.8	0.7112
AT4G17250			unknown protein		Lus10004355 [exp]	19.9	0.6751
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	23.0	0.6904
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	27.9	0.6659
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	29.7	0.6703
					Lus10030178 [exp]	32.7	0.6835

Compare expression of checked genes

Lus10005588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.