Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20340 171 / 1e-55 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) AT1G76100 164 / 8e-53 PETE1 plastocyanin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004155 [exp] 208 / 2e-70 AT1G20340 221 / 8e-75 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10034554 [exp] 203 / 2e-68 AT1G20340 218 / 1e-73 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10021839 [exp] 188 / 3e-63 AT1G20340 170 / 2e-55 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246100 [exp] 177 / 2e-58 AT1G20340 192 / 3e-63 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Potri.002G016000 [exp] 176 / 1e-57 AT1G20340 185 / 1e-60 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00127 [flax] [poplar] Copper-bind Copper binding proteins, plastocyanin/azurin family
Representative CDS sequence Show only first row Show all	>Lus10005628 pacid=23157211 polypeptide=Lus10005628 locus=Lus10005628.g ID=Lus10005628.BGIv1.0 annot-version=v1.0 ATGAAGGACGTCGGTGTCGCCATGGTCGCCACCGCCGCAACTGCGATCCTCGCAAGCAACGCCATGGCAGTTGAAGTCCTGCTCGGAGGCGACGACGGCT CATTGGCATTCGTTCCCAGCAAGTTCTCCATCGCCGCTGGGGAGACCATCACTTTCAAGAACAACGCCGGATTCCCGCACAACATCGTGTTCGACGAGGA CGAGGTTCCCGGCGGCGTGGATGTGTCCAAGATCTCCATGTCTGAAGAAGACCTGTTGAATGCTCCTGGGGAGACTTACAAAGTTGCTTTGACTGAGAAA GGAGAGTACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGCATGGTCGGCAAAGTCACTGTTAACTGA
AA sequence Show only first row Show all	>Lus10005628 pacid=23157211 polypeptide=Lus10005628 locus=Lus10005628.g ID=Lus10005628.BGIv1.0 annot-version=v1.0 MKDVGVAMVATAATAILASNAMAVEVLLGGDDGSLAFVPSKFSIAAGETITFKNNAGFPHNIVFDEDEVPGGVDVSKISMSEEDLLNAPGETYKVALTEK GEYSFYCSPHQGAGMVGKVTVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	0	1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	1.7	0.9714
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	2.4	0.9684
					Lus10018772 [exp]	3.0	0.9603
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	3.2	0.9499
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	5.1	0.9293
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	5.3	0.9522
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10017245 [exp]	6.5	0.9386
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	6.5	0.9414
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	11.3	0.9360
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	11.5	0.9331

Compare expression of checked genes

Lus10005628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.