Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 855 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 853 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 776 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 766 / 0 SKS7 SKU5 similar 7 (.1) AT4G22010 758 / 0 SKS4 SKU5 similar 4 (.1) AT4G38420 749 / 0 SKS9 SKU5 similar 9 (.1) AT4G28090 684 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 612 / 0 SKS17 SKU5 similar 17 (.1) AT1G55570 566 / 0 SKS12 SKU5 similar 12 (.1) AT3G13400 560 / 0 SKS13 SKU5 similar 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021238 [exp] 1053 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 938 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 894 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 765 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 764 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 744 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 741 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10022648 [exp] 701 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10023977 [exp] 687 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247700 [exp] 907 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 887 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 853 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 783 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 775 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.014G154500 [exp] 772 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 632 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 570 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 570 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.003G224100 [exp] 555 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10005649 pacid=23157222 polypeptide=Lus10005649 locus=Lus10005649.g ID=Lus10005649.BGIv1.0 annot-version=v1.0 ATGCTGCAGAAATTAGCCGGATCTCACTCGATCCTACTACTAGCTACTGCCGCTTTGTCTCTCGTCTCCCTCGTCGTTGCCGAGAGTCCGTACCGTTTCT TCAATTGGAACGTCACTTATGGTGACATTTATCCTCTCGGAGTCCGCCAAAGAGGCATTCTAATCAACGGCCAGTTCCCTGGACCTGACATTCACTGCGT TACCAACGATAATCTCATTATCAATGTCATCAATAGCCTGGACGAGCCTTTCCTTCTTTCTTGGAATGGGATGCAACAGAGGAGAAATTCATACGAGGAT GGGGTATACGGAACCACTTGTCCAATCCCACCGGGGAAGAACTTCACCTACATTCTTCAAGCAAAGGATCAGATTGGTAGCTTCTACTACTTCCCTTCAC TTGGATTCCATAAGGCAGTCGGTGGGTTCGGAGGAATCAGAATCCTTAGCCGTCCCGGGATCCCTGTTCCATTTTCTGACCCCGACGGTGACTTCACTGT TCTCATCGGAGATTGGTACAAGGCTAATCACACGACCTTGAAGCGTGTCTTGGATGGTGGCCATAGGTTGCCTCTTGTAAATGGCATCCTCATCAATGGC CGAGGTTCTAACGGCTACTCCCTGCCCGTCCAGCCAGGCAAGACTTACAGGCTGAGGATTTCAAACGTTGGGTTGCAAAACTCGCTCAACTTCCGCATCC AAAACCACAAGATGAAGCTGGTCGAAGTGGAAGGAACCCACACTCTCCAGACCACCTACTCTTCCTTGGACGTCCACCTCGGTCAATCTTACTCCGTTCT ATTCACCGCCGACCAGCCCGGCAAGGACTACTACATCGTGGTATCATCTCGCTGGACAACTCCGGTCATCACTACGACTGGCGTTCTTCACTACAGCAAC TCTGCCGGCCCAGTCTCCGGCCCACCGCCCGGCGGCCCAACCGACCAGATCGATTGGTCCCTCAACCAGGCTCGCTCCATCAGGACTAATTTGACTGCAA GTGGGCCGAGGCCCAACCCACAGGGATCTTACCACTACGGTATGATCAACACGAGTAGGACAATCGTCTTGGCGAACTCAGCTGGACAAGTGAACCGCAA GCAGAGATACGCCGTGAACAGCGTGTCATTCATTCCGGCGGACACTCCGTTGAAGCTGGCCGACTACTTCAAGATCCAGGGTGTTTTCAAGGAGAACAGC ATCTCCGATAGGCCTAACGGTGGTGGCATCTACCTGGACACCTCCGTTTTGACAGTTGACTACAGAACATTCATCGAGATTGTGTTCCAGAACACCGAGA ACATTGTTCAGAGTTGGCATCTCAATGGCTACAGCTTCTGGGTCGTCGGAATGGATGGAGGAAAATGGACAAGTGCCAGCAGGAACCAGTACAATCTAAG GGATACCGTCTCTAGAAGCACTGTTCAGGTATATCCAAATTCATGGAGTGCGATCTATATAGCGCTAGACAACGTGGGAATGTGGAACTTGAGGTCAGAG TACTGGGCACGACAGTACCTCGGTCAGCAGTTCTATCTGAGGGTCTTCACGACGTCGACTTCACTTAGGGACGAGTACCCTATTCCTAAGAACGCACTTC TTTGCGGAAGAGCTGCAGGCAGACACACACGTCCGATGTAA
AA sequence Show only first row Show all	>Lus10005649 pacid=23157222 polypeptide=Lus10005649 locus=Lus10005649.g ID=Lus10005649.BGIv1.0 annot-version=v1.0 MLQKLAGSHSILLLATAALSLVSLVVAESPYRFFNWNVTYGDIYPLGVRQRGILINGQFPGPDIHCVTNDNLIINVINSLDEPFLLSWNGMQQRRNSYED GVYGTTCPIPPGKNFTYILQAKDQIGSFYYFPSLGFHKAVGGFGGIRILSRPGIPVPFSDPDGDFTVLIGDWYKANHTTLKRVLDGGHRLPLVNGILING RGSNGYSLPVQPGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHLGQSYSVLFTADQPGKDYYIVVSSRWTTPVITTTGVLHYSN SAGPVSGPPPGGPTDQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTSRTIVLANSAGQVNRKQRYAVNSVSFIPADTPLKLADYFKIQGVFKENS ISDRPNGGGIYLDTSVLTVDYRTFIEIVFQNTENIVQSWHLNGYSFWVVGMDGGKWTSASRNQYNLRDTVSRSTVQVYPNSWSAIYIALDNVGMWNLRSE YWARQYLGQQFYLRVFTTSTSLRDEYPIPKNALLCGRAAGRHTRPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	1.0	0.9472
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	2.0	0.8241
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	2.2	0.8158
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	4.6	0.8333
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	5.8	0.8675
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	7.2	0.7873
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	7.7	0.7933
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	8.0	0.7839
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	9.4	0.7993
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	10.4	0.7710

Compare expression of checked genes

Lus10005649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.