Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17800 189 / 6e-58 MYB ATMYB56 myb domain protein 56 (.1) AT1G69560 189 / 1e-57 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 186 / 2e-57 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G17950 184 / 1e-56 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT3G29020 181 / 5e-56 MYB ATMYB110 myb domain protein 110 (.1.2) AT4G33450 176 / 1e-53 MYB ATMYB69 myb domain protein 69 (.1) AT1G73410 173 / 1e-52 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT5G39700 138 / 1e-39 MYB ATMYB89 myb domain protein 89 (.1) AT3G09230 134 / 4e-36 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 130 / 4e-35 MYB ATMYB25 myb domain protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020309 [exp] 300 / 8e-102 AT1G69560 140 / 3e-39 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10030452 [exp] 196 / 5e-60 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 196 / 8e-60 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 191 / 5e-58 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 189 / 1e-57 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10018936 [exp] 180 / 1e-54 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10028638 [exp] 178 / 5e-54 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10029746 [exp] 178 / 1e-53 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10040239 [exp] 136 / 6e-37 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085200 [exp] 195 / 6e-59 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 194 / 2e-58 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.015G033600 [exp] 187 / 2e-58 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.012G039400 [exp] 187 / 3e-58 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.008G088000 [exp] 193 / 6e-58 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.019G040900 [exp] 189 / 2e-57 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) Potri.005G186400 [exp] 185 / 3e-56 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 181 / 9e-55 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.007G134500 [exp] 179 / 1e-54 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.007G106100 [exp] 177 / 6e-54 AT4G33450 207 / 2e-66 myb domain protein 69 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005683 pacid=23168875 polypeptide=Lus10005683 locus=Lus10005683.g ID=Lus10005683.BGIv1.0 annot-version=v1.0 ATGATGACTAAAGTTGAGAGATTTGGTTCCGGGATGAAGAGGCCCTTCTGGGGTCTTTCTCTGGACTTGACTGAACAGTCTGCGGCGAAGGTGGTGGCGG TGGAGGAGGAGAAGGCGGACAACAGTCGTTCTGCTGTCGGTCGCGGCGGAAAAGGACAGAAGAAGAAGGTATGCGCAAGAGGGCATTGGAGGCCGAGTGA AGATGATAAGCTGAAGGAGCTTGTTACGAGGTTCGGGCCTCAGAACTGGAATGAGATCGCTGAAAACCTTGCTGGTAGATCAGGGAAGAGTTGCAGGCTG AGGTGGTTCAACCAGCTCGACCCGAAGATAACCCGAACCATATTCAGCGAGGAGGAAGAAGACCGTCTAATAACGGCGCACAGGATGTACGGCAACAAAT GGGCGATGATTGCAAAGATGTTTCCAGGGAGGACAGATAACGCCGTTAAGAATCACTGGCACGTCATGATGGCAAGACGTCAAAGGGAGCAGTCCAGCCC CTACCGTAGAAGGAGACCCTTCTCTAGCTATTCTTCTTCCTCCTCGGGCTCACCTGCTTTTCCGCCGAAAATCGGCAGCGAATCGACGGCAACCGCTAGT ACATGTACAACCGACCTCTCACTCTCGCCTTCCTCGGTGAGACCAGCTGGTTGCTTGCCTTTCTCCCGGTTCAGCCCTCCGAGGAAATACCAGTTGGGTG CCAATGGCTTTGTTGTGACTGCAGAGGACGATGAGACGAAAACAAAGGAACTAGACAATGGTAGCAACAACTCCAACAGTTGCAACAACAACGGGGTTTG GAACCGTGTTACACCGGGTTCCAACTCATCATTTTCTGAGAACGATTCAGTTGAAACTCGAACCGAAAACAGGATCGAACTGATCATTCGCAACGACGAA AATGTGGGGATTGCGACCATCGAGTTCATTGACTTCCTTGGAGTTGGATCCGCCTGA
AA sequence Show only first row Show all	>Lus10005683 pacid=23168875 polypeptide=Lus10005683 locus=Lus10005683.g ID=Lus10005683.BGIv1.0 annot-version=v1.0 MMTKVERFGSGMKRPFWGLSLDLTEQSAAKVVAVEEEKADNSRSAVGRGGKGQKKKVCARGHWRPSEDDKLKELVTRFGPQNWNEIAENLAGRSGKSCRL RWFNQLDPKITRTIFSEEEEDRLITAHRMYGNKWAMIAKMFPGRTDNAVKNHWHVMMARRQREQSSPYRRRRPFSSYSSSSSGSPAFPPKIGSESTATAS TCTTDLSLSPSSVRPAGCLPFSRFSPPRKYQLGANGFVVTAEDDETKTKELDNGSNNSNSCNNNGVWNRVTPGSNSSFSENDSVETRTENRIELIIRNDE NVGIATIEFIDFLGVGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	1.4	0.7432
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	10.9	0.6965
AT3G51750			unknown protein		Lus10002202 [exp]	13.1	0.6545
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	14.1	0.6738
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	15.6	0.7173
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	16.6	0.7108
AT3G14750			unknown protein		Lus10005563 [exp]	26.6	0.6059
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	27.4	0.7066
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10026994 [exp]	27.7	0.7275
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	28.1	0.7199

Compare expression of checked genes

Lus10005683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.