Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03720 667 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 662 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 617 / 0 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 183 / 5e-50 CAT9 cationic amino acid transporter 9 (.1) AT3G10600 179 / 2e-48 CAT7 cationic amino acid transporter 7 (.1) AT4G21120 176 / 3e-47 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 172 / 2e-46 CAT5 cationic amino acid transporter 5 (.1) AT5G04770 172 / 3e-46 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT1G17120 134 / 7e-33 CAT8 cationic amino acid transporter 8 (.1) AT3G04184 46 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020305 [exp] 1006 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10001334 [exp] 669 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 662 / 0 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 661 / 0 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 660 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 646 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10023271 [exp] 180 / 6e-49 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 179 / 3e-47 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10028195 [exp] 173 / 2e-46 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039600 [exp] 764 / 0 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.019G039700 [exp] 702 / 0 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.013G065000 [exp] 697 / 0 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.015G133100 [exp] 182 / 2e-49 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.002G137000 [exp] 177 / 4e-48 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1) Potri.008G017100 [exp] 177 / 5e-48 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.012G131300 [exp] 177 / 8e-48 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 171 / 1e-45 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 171 / 1e-45 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 171 / 2e-45 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10005687 pacid=23168888 polypeptide=Lus10005687 locus=Lus10005687.g ID=Lus10005687.BGIv1.0 annot-version=v1.0 ATGGTTGCAGCAGCAAAGTGTGTTACTTCATCTGGGTTCGGGAGTTTGATCAGAAGGAAGCAAGTTGATTCTGTTCTCTTCAAAAGAAGTGAAGACGATG GCCCTCAGCTAGCTCAGAGGCTCTCTGTTATTGATGTCATTGCGATTGGAGTTGGAGCAACAATTGGAGCAGGGGTATATGTTCTGGTGGGAACAGTTGC AAGAGAGCAGGCAGGACCCGCGTTAACCCTTTCTTTCCTTATTGCTGGAATAGCAGCAGCTCTATCTGCATTTTGCTATGCTGAGCTTGCGAGCCGGTGT CCATCTGCCGGAAGTGCCTATCATTATGCCTACATTTGCCTAGGAGAAGGTGCTGCATGGTTGATTGGATGGGCGCTTATTCTCGAATACACTCTTGGTG GTTCCGCCATTGCACGTGGCTTGACTCCAAATCTGGCTCTATTCTTTGGAGGACAAGAAAACCTGCCATCCTTATTGGCTCGTCATTCGATTCCTGTGCT AGGAATTGTGGTTGACCCGTGTGCAGCGATTCTGGTTCTCATTGTAACTGTACTTTTGTGCATGGGAATCAAAGAGAGCTCACTGGCACAAACTGTTGTC ACAATGATAAATATCTGCGGAATGATCTTCATCATAACAGCCGGTGGATACATAGCTTTCAAGAACGGATGGCCAGGATATGAACTGGATAGCGGGTATC TTCCTTTCGGATTGAATGGAATGCTTGCAGGATCTGGCATAGTGTTCTTCTCGTTCATTGGTTTTGATGTTGTTGCTAGTGCAGCGGAAGAGGTGAAGAA TCCAAAACGAGATTTGCCTATCGGCATGGGCATCGCATTAGCTATATGTTGTGTTTTATACATGCTTGTTTCGGTTGTTGTTGTTGGTTTGGTGCCGTAC TATGCACTTGATCCAGACACTCCGATCTCTTCAGCTTTCGCTTCTTACGGAATGCAGTGGGCAGTGTACATTATAACAGCCGGTGCAGTAACTGCTCTTT GTGCCAGTCTAATGGGTTCACTTCTCCCACAGCCCAGGATGTTCATGGCTATGGCTAGAGACGGATTGCTGCCATCGTTCTTTTCGGAAATCGATAAACA CACGCAAGTTCCAGTAAAAAGCACGATAGTTATCGGGATTCTTGCTGCAGCCCTTGCGTTCTTCATGGACGTTTCACAGTTAGCAGGAATGGTTAGTGTG GGGACACTACTTGCATTCACTGCTGTTGCAGTATCCGTCCTGATACTACGATACGTTCCTCCGGATGTGGTCCCAGTTCCCTCGTCTCTTCACGGGTCGA TTGATGTTTCGCCTTTGCTGATTGGTGACAATGATGTTGAGGAAGTCGCTAGCTTGAAATGTAAGGTTCCCGTCAAGTTCTTCGATCACGGTAAAGCCTT GCACCACAGTGATGGGACATCGGTTAGCACTTCTCTCGGTCACAAACAGACCGTTCAAGATGACATAAATCACGAGAAAAGGCGAACAATTGCTGCTTGG AGCATAACCGTGGTCTGCATTGGAGTTCTCATTCTCACATGGTCTGCTTCGTCCGAGTACCTACCGAGGTTTCTACAATTCACGTCGTGTACTGTGGGTG GAGGTGTTCTCTTGTGTGGTTTGGTCGTCCTAGCTTGTATAGCTCAAGATAACGGGAGGCACAGCTTTGGACACACAGGAGGTTTCACTTGCCCTATGGT CCCGTATCTACCGGTCGCTTGCATCGTGGTCAACACCTATTTGCTCGTAAATCTCGGGAGCGAGACATGGCTCCGCGTGTCGATATGGCTACTGATCGGG GTGCTCATCTACGTGTTCTATGGTCGGAATCACAGCTCTCTAATGGATGCCGTCTATGTTCCTACTGCTCATGCGAATAAGGCATACGACGCTTCGTCGT CGAGTTCTCAGATGGAGGATTAG
AA sequence Show only first row Show all	>Lus10005687 pacid=23168888 polypeptide=Lus10005687 locus=Lus10005687.g ID=Lus10005687.BGIv1.0 annot-version=v1.0 MVAAAKCVTSSGFGSLIRRKQVDSVLFKRSEDDGPQLAQRLSVIDVIAIGVGATIGAGVYVLVGTVAREQAGPALTLSFLIAGIAAALSAFCYAELASRC PSAGSAYHYAYICLGEGAAWLIGWALILEYTLGGSAIARGLTPNLALFFGGQENLPSLLARHSIPVLGIVVDPCAAILVLIVTVLLCMGIKESSLAQTVV TMINICGMIFIITAGGYIAFKNGWPGYELDSGYLPFGLNGMLAGSGIVFFSFIGFDVVASAAEEVKNPKRDLPIGMGIALAICCVLYMLVSVVVVGLVPY YALDPDTPISSAFASYGMQWAVYIITAGAVTALCASLMGSLLPQPRMFMAMARDGLLPSFFSEIDKHTQVPVKSTIVIGILAAALAFFMDVSQLAGMVSV GTLLAFTAVAVSVLILRYVPPDVVPVPSSLHGSIDVSPLLIGDNDVEEVASLKCKVPVKFFDHGKALHHSDGTSVSTSLGHKQTVQDDINHEKRRTIAAW SITVVCIGVLILTWSASSEYLPRFLQFTSCTVGGGVLLCGLVVLACIAQDNGRHSFGHTGGFTCPMVPYLPVACIVVNTYLLVNLGSETWLRVSIWLLIG VLIYVFYGRNHSSLMDAVYVPTAHANKAYDASSSSSQMED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	1.4	0.9687
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	3.9	0.9646
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	7.3	0.9393
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011985 [exp]	7.5	0.9387
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	7.7	0.9549
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	8.0	0.9371
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	8.4	0.9661
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	8.5	0.9608
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	8.9	0.9611
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	9.9	0.9551

Compare expression of checked genes

Lus10005687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.