Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52260 183 / 6e-57 MYB ATMYB19 myb domain protein 19 (.1) AT4G25560 183 / 1e-56 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT3G48920 177 / 2e-54 MYB ATMYB45 myb domain protein 45 (.1) AT1G57560 165 / 2e-49 MYB ATMYB50 myb domain protein 50 (.1) AT4G01680 160 / 2e-48 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G12720 161 / 7e-48 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 161 / 1e-47 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G26660 161 / 2e-47 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 161 / 3e-47 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G12870 157 / 7e-47 MYB ATMYB46 myb domain protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005740 [exp] 324 / 4e-112 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10039213 [exp] 318 / 3e-109 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027458 [exp] 305 / 2e-104 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027456 [exp] 302 / 7e-103 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10031281 [exp] 162 / 6e-48 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10038395 [exp] 161 / 6e-48 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 160 / 2e-47 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10039610 [exp] 161 / 5e-47 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10038022 [exp] 162 / 1e-46 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140500 [exp] 218 / 3e-70 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G143400 [exp] 213 / 4e-68 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.015G082700 [exp] 171 / 6e-51 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 167 / 2e-49 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.008G081600 [exp] 163 / 3e-48 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.003G155700 [exp] 163 / 3e-48 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.014G111200 [exp] 164 / 2e-47 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 163 / 2e-47 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.001G197000 [exp] 161 / 2e-47 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.002G185900 [exp] 163 / 3e-47 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005739 pacid=23169837 polypeptide=Lus10005739 locus=Lus10005739.g ID=Lus10005739.BGIv1.0 annot-version=v1.0 ATGGAAGAATGCAGAACCCAGAAGCCAAAGCTGAAGCTCCGGCGGGGCTTGTGGTCGCCGGAAGAAGACCACCGCCTCCGCAGCTACATCGCCCAAAACG GCCACAGCTGCTGGACCACTGTCCCTATCAACGCGGGCCTCCAAAGGAATGGAAAGAGTTGCAGGCTAAGATGGATAAATTATTTACGGCCAGGATTGAA GCGTGGCTTGTTTTCCGCTCACGAAGAGGATACAATCCTCACCCTTCATCGCCTCCTTGGTAACAAATGGTCTCAAATCGCACGTCACTTACCAGGAAGA ACCGACAATGAAATCAAGAACTGCTGGCACTCGTATCTCAGCAAAAAGATTCTCAAAATCCCCGACAATAAAAAACTGAGTGCCAGCTACTCGCCGGCAG AATCTCCACCGTCTACCACCGCCGATCAGCCCTCTAACAACATCACTAGTAATAGTATGGCCCAGGACAAGGGATCCTCGAGACCTTTGTTGCCACCAAA CCTAATGTTCGCCGAGTGGCTATCGGTGGACGGCTTTGCCGCTGCCATGTCGGCCGCCGAACCATTGTTTTGTTCGGATGAGGGTTTCGCTTCCGGAAGT GACGAGTTCGGTCTTGACATCCCGGTCAGTGAATTGTTTGATGAGAACTTGATGATGACGACGAGCGATGCGTCGGGTGCCAGTGATATGTTCTCGTCGT CGCAGTTCGGTTTCGGAGATCCGAGTATGGACAGTGGTGATCAGTTCGTTGAGTTTTGTAGCGACTTCCATTTTAACAGTGATCATGCTATGTACATGTG A
AA sequence Show only first row Show all	>Lus10005739 pacid=23169837 polypeptide=Lus10005739 locus=Lus10005739.g ID=Lus10005739.BGIv1.0 annot-version=v1.0 MEECRTQKPKLKLRRGLWSPEEDHRLRSYIAQNGHSCWTTVPINAGLQRNGKSCRLRWINYLRPGLKRGLFSAHEEDTILTLHRLLGNKWSQIARHLPGR TDNEIKNCWHSYLSKKILKIPDNKKLSASYSPAESPPSTTADQPSNNITSNSMAQDKGSSRPLLPPNLMFAEWLSVDGFAAAMSAAEPLFCSDEGFASGS DEFGLDIPVSELFDENLMMTTSDASGASDMFSSSQFGFGDPSMDSGDQFVEFCSDFHFNSDHAMYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	0	1
					Lus10024480 [exp]	2.8	0.8212
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	7.5	0.7537
					Lus10004769 [exp]	9.2	0.7470
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	9.7	0.7372
					Lus10028109 [exp]	11.0	0.7501
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	16.1	0.7347
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	16.1	0.7216
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	16.4	0.6912
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	21.5	0.7072
					Lus10000351 [exp]	22.4	0.6930

Compare expression of checked genes

Lus10005739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.