Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48920 186 / 5e-58 MYB ATMYB45 myb domain protein 45 (.1) AT4G25560 186 / 1e-57 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT5G52260 181 / 8e-56 MYB ATMYB19 myb domain protein 19 (.1) AT5G26660 168 / 6e-50 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G57560 166 / 1e-49 MYB ATMYB50 myb domain protein 50 (.1) AT4G01680 163 / 3e-49 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G63910 162 / 2e-47 MYB AtMYB103 myb domain protein 103 (.1) AT1G09540 161 / 3e-47 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G13890 161 / 4e-47 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G12870 158 / 6e-47 MYB ATMYB46 myb domain protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027456 [exp] 436 / 1e-155 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10005739 [exp] 332 / 4e-115 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10039213 [exp] 327 / 1e-112 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027458 [exp] 320 / 5e-110 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10031281 [exp] 165 / 9e-49 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10039610 [exp] 162 / 2e-47 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10002559 [exp] 161 / 4e-47 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10038022 [exp] 163 / 5e-47 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10029520 [exp] 160 / 2e-46 AT5G12870 220 / 2e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143400 [exp] 219 / 2e-70 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.012G140500 [exp] 216 / 2e-69 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G082700 [exp] 172 / 2e-51 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 170 / 1e-50 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.001G099800 [exp] 164 / 5e-49 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.005G001600 [exp] 165 / 5e-48 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.008G081600 [exp] 162 / 6e-48 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.003G155700 [exp] 162 / 8e-48 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.014G111200 [exp] 165 / 1e-47 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.002G185900 [exp] 165 / 1e-47 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005740 pacid=23169817 polypeptide=Lus10005740 locus=Lus10005740.g ID=Lus10005740.BGIv1.0 annot-version=v1.0 ATGGAAGAATGCAAAGATCAGAAGCCGAAGCTCCGGAGAGGATTGTGGTCTCCGGAAGAAGACGATCGCCTCCGGAGCTACATCGTCAGGAACGGCCACG GCTGCTGGACCACCGTTCCCATCAACGCCGGCCTCCAAAGGAATGGAAAGAGTTGCAGGCTAAGGTGGATCATTTATCTACGGCCAGGATTAAAGCGCGG TTTGTTTTCCGCAAACGAAGAGGATACAATCCTGACACTTCATCGCTTCCTCGGTAACAAGTGGTCACAAATTGCGCGTAATTTGCCAGGAAGGACCGAT AACGAGATAAAAAATTACTGGCACTCATATCTCAAAAGAAAGATTCTCAAACCTCAGCAATGTGCTAGCTCATCCTCTCTCACTGAATCTTCCTCTCCCC TCTCGCGTAACCGGCGAGAGGAGTCCGTACCGCCGATTTCCACCGTTGTCGCCGATCAATCCTATTACAACAACTCTACTGTTGGCCTAGACGACTATGT TTCATCGCGGCCTTTGTTGCCGCCGAACCTCATGTTTTCTGAGTGGCTGTCGATGGATGGCTCAGCAAGCACCACGTCAGCTGCCGAGGTATTGTTTCCC GATGAAGGGTTCGCGTGCGGAAGTGACGAGTTCAGCATTGACATCCCGAGTAGCGAGTTCCTAGGTGAACATTTATTCCAGGGGTATGATCTGAACTCAA CGACAATGAGCGATGGATCGGGCAGTGACATACTGTCGTCGCAGTTCGATTTTGGAGATCGGAGTCTGGATGGTGCTGATCAGTTCGTTGGATTCTATAG CGACTTCCACCTCAATATGGATAGTGTTGTGTACATATGA
AA sequence Show only first row Show all	>Lus10005740 pacid=23169817 polypeptide=Lus10005740 locus=Lus10005740.g ID=Lus10005740.BGIv1.0 annot-version=v1.0 MEECKDQKPKLRRGLWSPEEDDRLRSYIVRNGHGCWTTVPINAGLQRNGKSCRLRWIIYLRPGLKRGLFSANEEDTILTLHRFLGNKWSQIARNLPGRTD NEIKNYWHSYLKRKILKPQQCASSSSLTESSSPLSRNRREESVPPISTVVADQSYYNNSTVGLDDYVSSRPLLPPNLMFSEWLSMDGSASTTSAAEVLFP DEGFACGSDEFSIDIPSSEFLGEHLFQGYDLNSTTMSDGSGSDILSSQFDFGDRSLDGADQFVGFYSDFHLNMDSVVYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	0	1
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	2.4	0.9077
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	4.0	0.8821
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	4.2	0.8357
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	6.7	0.8218
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	6.9	0.8472
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	7.0	0.8356
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	9.6	0.8735
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	11.0	0.8181
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	11.4	0.8160
					Lus10013650 [exp]	13.0	0.8218

Compare expression of checked genes

Lus10005740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.