Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07210 115 / 5e-27 GARP ARR21 response regulator 21 (.1) AT4G16110 109 / 4e-25 GARP ARR2 response regulator 2 (.1) AT2G01760 103 / 1e-23 GARP ARR14 response regulator 14 (.1) AT5G58080 100 / 3e-22 GARP ARR18 response regulator 18 (.1) AT3G16857 100 / 4e-22 GARP ARR1 response regulator 1 (.1.2) AT2G25180 98 / 2e-21 GARP ARR12 response regulator 12 (.1) AT1G67710 97 / 2e-21 GARP ARR11 response regulator 11 (.1) AT4G31920 95 / 2e-20 GARP ARR10 response regulator 10 (.1) AT2G27070 94 / 3e-20 GARP ARR13 response regulator 13 (.1) AT5G59570 82 / 5e-17 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027416 [exp] 602 / 0 AT4G16110 169 / 4e-45 response regulator 2 (.1) Lus10016846 [exp] 114 / 1e-26 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 111 / 3e-26 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 110 / 4e-26 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10037719 [exp] 112 / 5e-26 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 105 / 7e-24 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 105 / 1e-23 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10036303 [exp] 98 / 3e-21 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10019058 [exp] 96 / 7e-21 AT2G25180 290 / 1e-90 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135500 [exp] 120 / 1e-28 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 119 / 2e-28 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G001000 [exp] 114 / 1e-26 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 110 / 2e-25 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.014G077200 [exp] 109 / 2e-25 AT4G16110 181 / 1e-49 response regulator 2 (.1) Potri.010G053100 [exp] 107 / 9e-25 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.018G111300 [exp] 104 / 1e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.002G152900 [exp] 103 / 2e-23 AT4G16110 179 / 2e-49 response regulator 2 (.1) Potri.006G188000 [exp] 102 / 1e-22 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G181000 [exp] 101 / 2e-22 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005777 pacid=23169847 polypeptide=Lus10005777 locus=Lus10005777.g ID=Lus10005777.BGIv1.0 annot-version=v1.0 ATGTCAGCGGACGAGAACGAGGTGAAGACTTTAGAGGATGGAGTTGCCTTATACTTAATGAAGCCGATAAAAAAAGATGACCTAAAAAACTTGTGGAAGT ATGCATACACAACAAAAACCAATGAAGCAAAACTCACAATTGTTGATCATGAAGAGGACACGATCTCTGCATCCTCAGTCAACAACATCAAAAGTACTCA TGACTTGGCAAAAAACACAGCACATAATAAGAAGAAATTAGGAAAGAGGAGGTCCAAAGAAGATGATGGTGAAGAAGAAGAAGAGGGCCATAGCAGGAAG AAGGCTAAGGTGGTTTGGACTGCCTCACTTCACAACCAATTCTTAGATGCTGTTAACCACTTTGGTCTTGATAAGGCATATCCGAAGAGGATTCTCGAAT TCATGAGAGTGCCGTGGCTTACAAGAGAACATGTTGCCAGCCACCTACAGAAATATCGATTGTTTTTGAAGAAAGTATCAAAAAAAGACTTAACATCACC AACAAAAGTATCGCCAAAGGGAGTGAGCTCAAACTTCTTCAATCTATTTTCTCTTTACAAAAGGATGAAGCCGGAAGATTTTGAGATGATAAAGCAAAGA CGACGTCGTAGTCCATTATCTCAATATCCTTACACGTCATCCAATTTTGCTACTCTAAGGTATCCAAATGATCTCCACAGATTTCAAGATGCACCGGCTT ATAATAATCCCAGGACAGCAACATTACTAAATTATTGTGACAACTACAATAGAATTGCAAGCTGCGATACTCGAGTACACATGACTGGTGGTAACCTATA TCCCGACCTAAACCACAACTTCAGTATGAACCACGAGGTTTCAAGAGCTAGTAAATCAACGTTTAACGGGAGTACTGCATCGCTTCTAAGCAACCACTTC AACGGTGGAGATGTACGTTCAAGGAACATAAGGTCGTCCGAGTACAACTCAAGTATGCAATTACCTTCTTTCTCGACAAACTTGTTGCCACAACTATCAG TAGACCGTGACATGAATTCGGAGTGGCCACATTCGTCGCGCCAAGTCAACATTATCGAGAGTTCAAGTGGAAGGATAGACAACACTCCCAATATCAACAT GAAGAGTAGCCTTTCAGCCAGCAATATTGTCAATGGTGATGCAACCCTATGTGACAGTATGTTCAATTATCAGGAGTATGATAACAGTGCTTTTCCTCCT TCCAATCAGGTTATTATGGATGGAGTTACAAAGTTTACTTCACCACTTGAGAACTCTCCCTCTAATAATGGTGAGATAAACAACATCATAAATGAATTTC CACAAGCTAATCTATCCAGTGAACCATTCACTGCTGCTTACAAGGTTCAAGATTCAAATGAACATGTGAATCCTAACAACTTTGGTGGCAATAGCAATTT TGCAAACGATCAAGGTGGAAAAGACATAATGGGGCTCGGCCGTGATGAGTCTTCCCATATGGAGATTTTGCTGACTTCTAAAGATACGGACTGGGCTGAT GAGTTCGTTCAATCTCTGCTTGGAGATGATTGGGAAACAGGGTGA
AA sequence Show only first row Show all	>Lus10005777 pacid=23169847 polypeptide=Lus10005777 locus=Lus10005777.g ID=Lus10005777.BGIv1.0 annot-version=v1.0 MSADENEVKTLEDGVALYLMKPIKKDDLKNLWKYAYTTKTNEAKLTIVDHEEDTISASSVNNIKSTHDLAKNTAHNKKKLGKRRSKEDDGEEEEEGHSRK KAKVVWTASLHNQFLDAVNHFGLDKAYPKRILEFMRVPWLTREHVASHLQKYRLFLKKVSKKDLTSPTKVSPKGVSSNFFNLFSLYKRMKPEDFEMIKQR RRRSPLSQYPYTSSNFATLRYPNDLHRFQDAPAYNNPRTATLLNYCDNYNRIASCDTRVHMTGGNLYPDLNHNFSMNHEVSRASKSTFNGSTASLLSNHF NGGDVRSRNIRSSEYNSSMQLPSFSTNLLPQLSVDRDMNSEWPHSSRQVNIIESSSGRIDNTPNINMKSSLSASNIVNGDATLCDSMFNYQEYDNSAFPP SNQVIMDGVTKFTSPLENSPSNNGEINNIINEFPQANLSSEPFTAAYKVQDSNEHVNPNNFGGNSNFANDQGGKDIMGLGRDESSHMEILLTSKDTDWAD EFVQSLLGDDWETG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Lus10005777 [exp]	0	1

Compare expression of checked genes

Lus10005777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.