Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39390 469 / 4e-167 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT4G09810 455 / 8e-162 Nucleotide-sugar transporter family protein (.1) AT1G34020 436 / 2e-154 Nucleotide-sugar transporter family protein (.1) AT1G76670 260 / 4e-85 Nucleotide-sugar transporter family protein (.1) AT1G21070 258 / 3e-84 Nucleotide-sugar transporter family protein (.1) AT5G42420 254 / 1e-82 Nucleotide-sugar transporter family protein (.1.2) AT2G28315 155 / 3e-44 Nucleotide/sugar transporter family protein (.1) AT2G30460 148 / 2e-41 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 143 / 1e-39 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT5G55950 69 / 1e-12 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006810 [exp] 562 / 0 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 445 / 9e-158 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 430 / 4e-151 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 259 / 1e-84 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 259 / 2e-84 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10021464 [exp] 160 / 3e-46 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 149 / 4e-42 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 147 / 1e-40 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 136 / 1e-37 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077900 [exp] 496 / 7e-178 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G086700 [exp] 476 / 3e-170 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G064700 [exp] 460 / 1e-163 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 457 / 1e-162 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 259 / 2e-84 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 258 / 4e-84 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G011100 [exp] 153 / 2e-43 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 153 / 3e-43 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 149 / 4e-42 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 149 / 4e-42 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10005790 pacid=23174716 polypeptide=Lus10005790 locus=Lus10005790.g ID=Lus10005790.BGIv1.0 annot-version=v1.0 ATGTCTTCGCCAAGCAAAGCTGATAAGAAGGCAACTCTCGATACAGCATCATGGATGTTCAATGTCGTCACCTCCGTTGGAATCATCCTCGTGAACAAAG CTCTCATGGCTACCTATGGCTTTAGTTTCGCAACTACTTTAACCGGTCTCCATTTCGCCACAACGACTTTGTTAACTCTTGTTCTAAGATGGCTGGGATA CATTCAACCATCTCATTTGCCATTACCAGACCTTTTGAAGTTCGTTCTGTTTGCAAACTTCTCCATTGTCGGTATGAACGTGAGCCTAATGTGGAACTCA GTTGGATTTTATCAGATTGCCAAGCTGAGTATGATCCCAGTTTCATGCGTTCTGGAAGTTTTCCTCGACAACGTTAGGTATTCGCGGGACACCAAGCTTA GCATACTAGTAGTCCTCGTAGGAGTTGCTGTTTGCACTGTTACAGACGTGAGCGTCAACGCTAAAGGATTCATAGCAGCAGCCATAGCCGTCTGGAGCAC TTCACTGCAACAATATTACGTACACTATCTACAACGAAGGTACAATCTCGGTTCTTTCAACTTGTTAGGACACACCGCTCCAGCACAGGCTTCATCTCTG CTGCTAGTTGGCCCATTCGTGGACTACCTTCTGACCGGCAAACGAGTTGATGCTTATCCCTACAGTTTCACCTCAGTTGCATTCATAGTCCTATCCTGCA CAATTGCAGTCGGGACGAACCTCAGCCAGTTCATCTGCATCGGAAGGTTCACCGCTGTCTCGTTCCATGTCCTCGGGCCCATGAAGACGATCCTCGTCCT AGTCCTCGGCTTCATCTTCTTCGGCAAAGACGGGCTGAACCTCCACGTGGTCGTCGGAATGATCATCGCCGTCGCCGGGATGATCTGGTACGGCAACGCC TCGTCGAGACCCGGCGGGAAAGAGCGCCGCAGCCTCTCCATGAACGGCGGCAAAGGTTCGTCTAAGCACGACGCCTCGTCAGAGTCCACCGAGGAGGCCG AGGAGAAAGTCTGA
AA sequence Show only first row Show all	>Lus10005790 pacid=23174716 polypeptide=Lus10005790 locus=Lus10005790.g ID=Lus10005790.BGIv1.0 annot-version=v1.0 MSSPSKADKKATLDTASWMFNVVTSVGIILVNKALMATYGFSFATTLTGLHFATTTLLTLVLRWLGYIQPSHLPLPDLLKFVLFANFSIVGMNVSLMWNS VGFYQIAKLSMIPVSCVLEVFLDNVRYSRDTKLSILVVLVGVAVCTVTDVSVNAKGFIAAAIAVWSTSLQQYYVHYLQRRYNLGSFNLLGHTAPAQASSL LLVGPFVDYLLTGKRVDAYPYSFTSVAFIVLSCTIAVGTNLSQFICIGRFTAVSFHVLGPMKTILVLVLGFIFFGKDGLNLHVVVGMIIAVAGMIWYGNA SSRPGGKERRSLSMNGGKGSSKHDASSESTEEAEEKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	0	1
AT3G51580			unknown protein		Lus10025140 [exp]	4.5	0.8425
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	4.6	0.8252
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	5.1	0.8492
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	5.5	0.8548
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	6.9	0.8117
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	9.6	0.8470
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	9.9	0.8005
AT3G51580			unknown protein		Lus10025224 [exp]	10.2	0.7931
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	15.5	0.8401
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	16.2	0.7975

Compare expression of checked genes

Lus10005790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.