Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43160 97 / 9e-24 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G61890 95 / 2e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G50080 94 / 3e-22 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G33710 93 / 6e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 91 / 2e-21 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07310 92 / 3e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G64750 86 / 1e-18 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 82 / 5e-18 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G47520 79 / 3e-17 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G03800 80 / 4e-17 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006796 [exp] 431 / 9e-152 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 93 / 2e-21 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10028679 [exp] 84 / 6e-18 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 80 / 4e-17 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003601 [exp] 79 / 2e-16 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 79 / 3e-16 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 78 / 4e-16 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037448 [exp] 79 / 5e-16 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10042996 [exp] 77 / 7e-16 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076800 [exp] 102 / 1e-24 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G195000 [exp] 100 / 4e-23 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.005G087200 [exp] 98 / 4e-23 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 96 / 6e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 92 / 1e-21 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.012G108500 [exp] 90 / 8e-21 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.010G006800 [exp] 85 / 6e-19 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.009G101900 [exp] 82 / 1e-17 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.002G065600 [exp] 82 / 4e-17 AT5G50080 88 / 6e-20 ethylene response factor 110 (.1) Potri.008G210900 [exp] 80 / 6e-17 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10005805 pacid=23174744 polypeptide=Lus10005805 locus=Lus10005805.g ID=Lus10005805.BGIv1.0 annot-version=v1.0 ATGGACAATAGGAATAATAGTAAAGGGAAGCAAGTGATTCGGAGTGAGAATCCACCGTTGGAAATGGTGGAAGTGGGAGGAGAAATGGTGGAGGAAGTGG TGAAGGCGACACCGAGGCATAAGTTGCTGTCGTCTGAGATGGAGATGTCGGCCATGGTCTCCGCCTTGACGCACGTCGTGGCCTCCGGCGGAGGCGGTGC CTCCGGAAGCCAATTTCCTCCGTTTCCGACGCGGGAAAGCAGTGATTATGAAGTAGGAGGAAGAACAAAAAGTAACAATCTTTGGATTGGGAACGATGGA TTCGGAGCTCCACCGCAGCAGCTTCCTCTTCATCTTCCTCCTCTGGCGAGTGGTGTTCATCTTTACCGACCAGCTTCATATTTGTTCCCTCCTCCTGCTC AAGGTGGGAGTATAATCAACAACGCATCTCAACCGTCGATCCAACAAAGACCACAACCAACATACCAAACGGTGAACAACAGAACAGAGGATGCCACGGC AGGGACAGTTGGGAGGAAGTACAGGGGAGTCAGAAGAAGGCCGTGGGGGAAGTGGGCAGCAGAGATTCGAGATCCCATAAAGGCTGCAAGAGTATGGCTA GGCACGTTCGAGACTGCTGAGGCAGCTGCTCGAGCCTACGACGAAGCTGCATTGCGTTTTCGAGGCAGCAAAGCGAAGCTCAACTTCCCCGAGAACGTCA GGATGGTCATTCCCAACACTGCCACCTCCACCATCACCAACAACATCAACGTTCCATTTTTTTCACAGCAGAACCGGTTTGTAAACACGATGGGGATGAA CCGGGATCGGAGGCCGGTGGGTGGTTCTTCTTCTTCGCAGTTGGTGTTGGGAGTTGGAGGATACTACGATCAACATCAGAATCAGAATGTGGCGTCTCCT AATCTTCCTCAGGGATACCAATTTCGACCTTTCGTAGCGCCTACTCCTCCGAGTGCTTCTCCGTGTTATCAACCTCTGCAGAGTACTGGCTCAGGGGAGT TTTCGACCGCGCCTTGGCAGGGTTCGCCGTCCGGTGGCAGCAGGGAGACTTCTGCTTCCGGATAA
AA sequence Show only first row Show all	>Lus10005805 pacid=23174744 polypeptide=Lus10005805 locus=Lus10005805.g ID=Lus10005805.BGIv1.0 annot-version=v1.0 MDNRNNSKGKQVIRSENPPLEMVEVGGEMVEEVVKATPRHKLLSSEMEMSAMVSALTHVVASGGGGASGSQFPPFPTRESSDYEVGGRTKSNNLWIGNDG FGAPPQQLPLHLPPLASGVHLYRPASYLFPPPAQGGSIINNASQPSIQQRPQPTYQTVNNRTEDATAGTVGRKYRGVRRRPWGKWAAEIRDPIKAARVWL GTFETAEAAARAYDEAALRFRGSKAKLNFPENVRMVIPNTATSTITNNINVPFFSQQNRFVNTMGMNRDRRPVGGSSSSQLVLGVGGYYDQHQNQNVASP NLPQGYQFRPFVAPTPPSASPCYQPLQSTGSGEFSTAPWQGSPSGGSRETSASG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005805 [exp]	0	1
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	12.7	0.5980
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	39.0	0.5622
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10004156 [exp]	48.0	0.5426
					Lus10013877 [exp]	58.2	0.5059
					Lus10043281 [exp]	100.2	0.5138
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	120.0	0.5072
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	140.0	0.4937
					Lus10043259 [exp]	265.8	0.4408

Compare expression of checked genes

Lus10005805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.