Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 299 / 4e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 293 / 4e-83 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 292 / 2e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 281 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 283 / 4e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G31540 275 / 3e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G11170 278 / 3e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 275 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 274 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 272 / 7e-76 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006789 [exp] 1169 / 0 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 1044 / 0 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 729 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 707 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 630 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 574 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 553 / 3e-180 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015650 [exp] 543 / 4e-179 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 528 / 2e-173 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 372 / 2e-111 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 362 / 5e-107 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 352 / 1e-106 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 361 / 9e-106 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 346 / 3e-101 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 335 / 6e-98 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 329 / 6e-96 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069600 [exp] 330 / 6e-95 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 331 / 7e-95 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 327 / 8e-94 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10005813 pacid=23174739 polypeptide=Lus10005813 locus=Lus10005813.g ID=Lus10005813.BGIv1.0 annot-version=v1.0 ATGATGATTTCTTCTTCACCATCACCTCCTCCTCAAGAGTGCTACACCGGAAAATGGGAGTACGACGTGTTCGTGTGCTTCAGAGGCAGAGACACCCGTC GTCTCTTCACCAGCCACCTCGCGGGGCATCTACGCCAACGCTCCATCCGACCTTTTACCGACGAGATATTGGACAGGGCGGAGAACATCGACGTCGCCCT CCTCGATCTCCTCCGTAGATCGGCCCTTTCGGTGGTGATATTCTCGGAGGGTTTCGCAGAGTCCAGCTACTGCCTCGATGAAGTGGCCACCATCGCCGAG AGTGTGGAGACGTTCGGGCATTGTGTTCTCCCCGTTTTCTACGGTGTGGAGCCTGAGGAGGTGTCTGGCGACGGCTACGGTGGATATAAGGATGTACTTG AGGAAGAGCTTAAGCCTAGCGAGGAGAAGAAGAAGAGATGGATGGATGGTTTGAAGCTAGTGTGCCAACTTGCTGGCCGTACCTCAAAAGAATTCCAGGA CGATTACGAAATGTGCAAGACGATTGTGGATGATGTTTTGAAGGCACTAAGTGATATGTCTTTGAAGCGAAAACCTAACAGCTTGGTCGGGATGGAAACT CGGGTTTTGGAGGTTTGTCGGCTATTAGCTACAGATGGTACATCAAATGTTATAGGACTATGGGGGATGGGCGGTGTAGGTAAAACAACTTTAGCTAGAA CTTTGTATCAGAGACTAACTCCTCCATCGAGAGATGGGATCAAACATCATTTCGTGTCGAACATCAACGACAATAATGGCAAGACGCGTGGTGGAGTTGA TGAGCTAGTGCAACATGCAACAACTCTATTCGATTCTATTTTGGAGCAGTTACTTTTGGGGGAAACTTGGGATCCGACCAAACTCTTTGGTGCAGGGAGT AAAATCATTATAACGTCTCGAAATATGAGAGTCATTCAACATGTAAGGGCGAAAATACATCATGTTAAAGAGCTGAATCCGGATGAATCTCTTCAAGTTT TCAACTTGCATGCATTCAGACAACCGAGTAGCCCTTCTGATGACCTAAAGGGCCACTCGGATCTCGCTATATCGTATTGCAAGGGGAACCCTTTGGCCTT GCAGGTTTTGGGAGGAGCATTGTTTGGCAAGGAGAAAGAGTATTGGAAGAGTTTCTTATCCGGATTGGAAAGCAATTCGAAGCCAGAAATCCACGATGTG CTCAGTACAAGCTACTACGCCTTGAAAGGCGAAGAGCAAAGATTGTTCATGGATGTTGCTTGTTTCCAATTCAACACTCCCAAGACCCGACTGATCAAAT ATCTTGCAACTAGTTATGAGTCCGCCTACAGTATGATAGATGATCTGATCGACAAGTCGTTGATGTTCACTATACCTTCGAACGATGTTACACACTACGA GGTGGTCGTGGTGCACGATCTCCTTAGAGAAATGGCTTGGAACATAGTGAAAGCAGAACCAATTCCTAGCCGGTTGAGGAACCCTAGTGATGTCCACAAA CTATTTGCACTAAGAGAAGTAGAAAAGCCTAGATTTCCATTGTTTAAACCCAAAGCCAAATATGCACATAGGAAGGGTGCAGTTGAGGGAGGTAAAGAAA TTCAAAGTTTGGGTTTAAACCTTTCCAAAACCAAGAAGAAGGAAGTATGTCTTGGAGCCAAAGCCTTTGAGGGGATGGACTCACTTAGGTTGTTGGGATT CTACGGCCACCGAGCCACAGAGCACGTTGGGGTTCCTAAAATCCGTCTCATCGATGGAAGGCTTGACACTCTCCCTAACGAGTTAAGATGGCTCGAGTGG ACTGGATATCCTTTGAAATGCTTTCCTCAAAAATTTTGTCCTGACAAACTCGTCACACTTTCATTACGACATAGTCGAATTAAAAGATGCTGGCCTGAAG GAGTCAAGCCAAAGCTTATGCATCTTATTACGGTCGACCTCTCTTACTGCATAAACCTAAAAGTCGTCCCAAACATGTCGTGTTCCAAAAAGCTCGAATT ACTTCGTCTCAAGGGATGCAAGAGCCTAGTTGAAGTACCGTCTCATGTCCAATATTTGGACAAGCTGGTCGAGGTGGACCTTTGCGAATGTTCGAACTTG GTTCGTATCCCAGCCAGACTCGACTCAAAATGCTTGAAGTATGTTCGGTTGGCTGGATGTTACAAACTCACTCATTATCCTGAGATCAATAGCTCAGAAG CGGTGTTCGAAGAGCTACCAATTGGAGAGTCTCCGATGGCAGTTAACAAGGTCAAGATGCATGGAAAATGCATCACTACCTTGAAACGTTTTCTATTGTG CCGACATAGAACAATGAACAACATCACTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGA TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG ATGATGATGATGATGNNNNNNNNNNNNNNNCTAAAAATCGAGCGGCGGTAAAACCTTCCCCGCCCGCTGAATTTCCCTTTTCCCAATCTCAACGACGAGA CAAAAGGAAGAGCAACCCGTCTTTGCCTTCGTCGCTTGGAAACCATGAAGTCAATCCTCTTCTACGGCGGGTCATCGGTGAGTCAATCTTCGTTTCCCTG CTTTTGTTTGATCATATTCTACGTGTAATCCCCTTGTTCAGGGTTTAG
AA sequence Show only first row Show all	>Lus10005813 pacid=23174739 polypeptide=Lus10005813 locus=Lus10005813.g ID=Lus10005813.BGIv1.0 annot-version=v1.0 MMISSSPSPPPQECYTGKWEYDVFVCFRGRDTRRLFTSHLAGHLRQRSIRPFTDEILDRAENIDVALLDLLRRSALSVVIFSEGFAESSYCLDEVATIAE SVETFGHCVLPVFYGVEPEEVSGDGYGGYKDVLEEELKPSEEKKKRWMDGLKLVCQLAGRTSKEFQDDYEMCKTIVDDVLKALSDMSLKRKPNSLVGMET RVLEVCRLLATDGTSNVIGLWGMGGVGKTTLARTLYQRLTPPSRDGIKHHFVSNINDNNGKTRGGVDELVQHATTLFDSILEQLLLGETWDPTKLFGAGS KIIITSRNMRVIQHVRAKIHHVKELNPDESLQVFNLHAFRQPSSPSDDLKGHSDLAISYCKGNPLALQVLGGALFGKEKEYWKSFLSGLESNSKPEIHDV LSTSYYALKGEEQRLFMDVACFQFNTPKTRLIKYLATSYESAYSMIDDLIDKSLMFTIPSNDVTHYEVVVVHDLLREMAWNIVKAEPIPSRLRNPSDVHK LFALREVEKPRFPLFKPKAKYAHRKGAVEGGKEIQSLGLNLSKTKKKEVCLGAKAFEGMDSLRLLGFYGHRATEHVGVPKIRLIDGRLDTLPNELRWLEW TGYPLKCFPQKFCPDKLVTLSLRHSRIKRCWPEGVKPKLMHLITVDLSYCINLKVVPNMSCSKKLELLRLKGCKSLVEVPSHVQYLDKLVEVDLCECSNL VRIPARLDSKCLKYVRLAGCYKLTHYPEINSSEAVFEELPIGESPMAVNKVKMHGKCITTLKRFLLCRHRTMNNITDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDXXXXXXKNRAAVKPSPPAEFPFSQSQRRDKRKSNPSLPSSLGNHEVNPLLRRVIGESIFVSL LLFDHILRVIPLFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10005813 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	1.0	0.9303
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	3.0	0.8563
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10036698 [exp]	6.3	0.8803
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	7.0	0.8359
					Lus10042751 [exp]	7.2	0.8521
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	8.8	0.8429
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	11.7	0.7564
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	11.8	0.7714
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	12.0	0.8471
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	13.0	0.8287

Compare expression of checked genes

Lus10005813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.