Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28470 267 / 4e-88 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT5G56110 213 / 5e-67 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT3G02940 195 / 4e-60 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 195 / 4e-60 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 192 / 1e-58 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G26660 192 / 2e-58 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G05100 191 / 2e-58 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 189 / 3e-58 MYB ATMYB41 myb domain protein 41 (.1) AT4G01680 188 / 3e-58 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G10280 189 / 1e-57 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039462 [exp] 546 / 0 AT3G28470 284 / 9e-95 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10033119 [exp] 242 / 8e-78 AT3G28470 214 / 3e-67 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10036660 [exp] 241 / 3e-77 AT3G28470 213 / 2e-66 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10033003 [exp] 194 / 7e-59 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10033473 [exp] 186 / 8e-58 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10018418 [exp] 189 / 1e-57 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 185 / 3e-57 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 187 / 9e-57 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10028435 [exp] 182 / 2e-56 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075000 [exp] 275 / 2e-90 AT3G28470 254 / 2e-82 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.015G067700 [exp] 250 / 9e-81 AT3G28470 222 / 6e-70 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.012G072500 [exp] 249 / 1e-80 AT3G28470 228 / 3e-72 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.011G167600 [exp] 211 / 3e-66 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.001G470500 [exp] 209 / 1e-65 AT5G56110 334 / 2e-114 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.004G033100 [exp] 195 / 3e-59 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.010G165700 [exp] 194 / 4e-59 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.015G082700 [exp] 194 / 5e-59 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.019G118200 [exp] 193 / 7e-59 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.017G086300 [exp] 194 / 1e-58 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005834 pacid=23180245 polypeptide=Lus10005834 locus=Lus10005834.g ID=Lus10005834.BGIv1.0 annot-version=v1.0 ATGGGGAGACCTCCTTGCTGTGACAAGTCGAATGTGAAGAGAGGACTTTGGACCCCTGAGGAAGATGCCAAGATCCTTGCTTATGTCTCCCTCTATGGCA TTGGCAATTGGACCTTAGTCCCCAAAAAAGCCGGACTGAATAGATGTGGAAAGAGTTGCAGGCTTAGATGGACTAATTACTTAAGACCTGATCTCAAACA TGATAACTTCACTCCTGATGAGGAAGAGCTCATTATCAGACTTCATGAAGCCATTGGCAGCAGGTGGTCTATAATTGCAAGGCAACTGCCAGGGAGAACA GACAATGATGTGAAGAACTACTGGAACACAAAACTAAAGAAGAAGCTTCAGAAAATAGGGATTGACCCAATCACTCACAAACCCATCTCCAAGATCATCA ATGACTTTGGCAACATCAGTGGAATCAATCATGGAAACCAATCTGCATCCCCTTTCATGAGGAAGACACTCAACAGCAATAATCTTAACAACAACAACAA TAATCCCATGGTCATGAACCTCCAATCAGAACCATCTTCAACTACTACTACAGCCTCATCTTGCTCCAACACCACCACATTCATGGTTGAAAATAATACT GGTTGCTCATCTGACTACTACTTTTCTCATACCAACAACAGCTTTTTCAATCATGACTACTACTCATCCTCCTCTGCCTCATCATCTTCGACTACTCCTC TGTCATCATCATGCCAGCAGTACCCTCAAACTGATCCACTGACGTGGAAGGAGTTCCTTGTTAGCGACCCACCAACATCATCATCAGCAGCAGCAAACTT GTCAGAAGGAAACGGATGTTTGGATATGAATGAAAGGGGAAATATTGGGAGTAACAAAAATATTAATGCAGATGATAATAATGAGGGTGCTGCTAGCTCA TTTGTGGAGAATATGCTTGATAAGGAGAGGGAGATGATGCTCTCTCAGTTTCCACAGCTTTTGGATCCTTCTTCTTTTGATTACTGA
AA sequence Show only first row Show all	>Lus10005834 pacid=23180245 polypeptide=Lus10005834 locus=Lus10005834.g ID=Lus10005834.BGIv1.0 annot-version=v1.0 MGRPPCCDKSNVKRGLWTPEEDAKILAYVSLYGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDNFTPDEEELIIRLHEAIGSRWSIIARQLPGRT DNDVKNYWNTKLKKKLQKIGIDPITHKPISKIINDFGNISGINHGNQSASPFMRKTLNSNNLNNNNNNPMVMNLQSEPSSTTTTASSCSNTTTFMVENNT GCSSDYYFSHTNNSFFNHDYYSSSSASSSSTTPLSSSCQQYPQTDPLTWKEFLVSDPPTSSSAAANLSEGNGCLDMNERGNIGSNKNINADDNNEGAASS FVENMLDKEREMMLSQFPQLLDPSSFDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	4.4	0.9778
					Lus10002099 [exp]	6.2	0.9778
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	6.5	0.9104
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002395 [exp]	6.6	0.9104
					Lus10011594 [exp]	7.5	0.9778
					Lus10025316 [exp]	8.7	0.9778
AT2G46300			Late embryogenesis abundant (L...		Lus10010130 [exp]	9.0	0.8260
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	9.7	0.9778
AT5G39200			unknown protein		Lus10030710 [exp]	10.7	0.9778
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	11.5	0.9778

Compare expression of checked genes

Lus10005834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.