Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07290 501 / 6e-179 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 388 / 6e-135 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G32272 64 / 3e-11 Nucleotide/sugar transporter family protein (.1.2) AT5G19980 64 / 5e-11 GONST4 golgi nucleotide sugar transporter 4 (.1) AT4G31600 61 / 3e-10 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G77610 55 / 4e-08 EamA-like transporter family protein (.1) AT1G76340 54 / 6e-08 GONST3 golgi nucleotide sugar transporter 3 (.1) AT1G21870 52 / 2e-07 GONST5 golgi nucleotide sugar transporter 5 (.1) AT2G28315 50 / 2e-06 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001205 [exp] 651 / 0 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10024126 [exp] 404 / 3e-140 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 309 / 3e-103 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10017759 [exp] 69 / 7e-13 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 67 / 3e-12 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 65 / 2e-11 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10025645 [exp] 65 / 2e-11 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10017141 [exp] 65 / 2e-11 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10042700 [exp] 63 / 1e-10 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044000 [exp] 519 / 0 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.007G106400 [exp] 409 / 4e-142 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 406 / 4e-141 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G071700 [exp] 72 / 9e-14 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.018G127400 [exp] 67 / 3e-12 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 66 / 1e-11 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G255400 [exp] 65 / 2e-11 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G009400 [exp] 62 / 9e-11 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G026600 [exp] 59 / 1e-09 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.005G177200 [exp] 58 / 3e-09 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10005865 pacid=23176924 polypeptide=Lus10005865 locus=Lus10005865.g ID=Lus10005865.BGIv1.0 annot-version=v1.0 ATGGGCATGTCTCATTTGAAGTTGCAAGTTCTGGTCCCTAAAGATCACGATGAAGAAGCAGGCACCATTACCACTTCTCTCAATGGAGATCAGTTGACTC CTTCAAGTGTTCATAGTTCAATTGGGAGTTTCGCGGAACGAAGAGCTGTTGGTGACAGGTTTCGCCATACGTCATATGCTGACAATGTTGGGGGCGAAAA ACAAGCAGGGAAGAAGTCGGGGCCTCTATTGGCTGGAGCAGCTTACTGCGTTTCTTCTTGCAGCATGATCTTATTGAATAAGGTTGTTCTATCAACCTAC AACTTCAATGCAGGCACATCTCTAATGCTCTATCAGAATCTCATCTGTTGTCTGGTTGTTGCTCTCTTGGGTCTGTTTGGAGTAGTTACGGTTGAAAAGC TCAACTGGAAGCTAGTGAAGCTATGGATTCCAGTCAACTTAATCTTTGTTGGAATGCTTGTTTCAGGCATGTACAGTCTGAAATACATAAATGTTGCAAT GGTGACAATTTTGAAGAATATGACAAATATCATCACGGCAATTGGAGAACTATACATCTTCCGCAAACATCAGAATCAGAAAGTATGGACCGCCATGTTC TTGATGATCATTTCAGCTGTTAGTGGTGGCATTACGGATCTCTCCTTTGATGCCACTGGCTATGCATGGCAAACTGCAAACTGCATCTTAACTGCTAGCT ACTCGCTGACACTGCGACGAGTGATGGACAAGGCAAAGCAGACAACAAAAACAGGGACCCTAAATGAAATTTCAATGGTGTTACTTAACAATCTGTTATC TCTGCCTTTTGCTGTCTTGTTGATTTTGCTTGGTGGGGAATGGAGATATGTAATTACCACGGATGTGATAGAGTTACCAATGTTCTGGGTGGTGGCCACC GTCAGTGGGTTACTTGGTCTTGCAATTAGCTTCACCTCCATGTGGTTCTTACATCAAACAAGCCCTACCACTTACAGCCTGGTTGGTTCGTTGAACAAGA TACCTATATCTCTGGCGGGTCTGATGCTGTTCAACGTACCTCTGAGTATGCCGAATTTGTTCAGCATTCTATTTGGGCTATTTGCTGGGATATTCTTTGC CAGGGCCAAAATGTCATGA
AA sequence Show only first row Show all	>Lus10005865 pacid=23176924 polypeptide=Lus10005865 locus=Lus10005865.g ID=Lus10005865.BGIv1.0 annot-version=v1.0 MGMSHLKLQVLVPKDHDEEAGTITTSLNGDQLTPSSVHSSIGSFAERRAVGDRFRHTSYADNVGGEKQAGKKSGPLLAGAAYCVSSCSMILLNKVVLSTY NFNAGTSLMLYQNLICCLVVALLGLFGVVTVEKLNWKLVKLWIPVNLIFVGMLVSGMYSLKYINVAMVTILKNMTNIITAIGELYIFRKHQNQKVWTAMF LMIISAVSGGITDLSFDATGYAWQTANCILTASYSLTLRRVMDKAKQTTKTGTLNEISMVLLNNLLSLPFAVLLILLGGEWRYVITTDVIELPMFWVVAT VSGLLGLAISFTSMWFLHQTSPTTYSLVGSLNKIPISLAGLMLFNVPLSMPNLFSILFGLFAGIFFARAKMS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	0	1
AT3G05390			unknown protein		Lus10004494 [exp]	3.0	0.9213
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	3.9	0.8950
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	4.9	0.8966
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	6.7	0.8977
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	7.5	0.8880
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10001732 [exp]	8.5	0.8817
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006696 [exp]	10.6	0.8674
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	11.0	0.9016
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026820 [exp]	12.5	0.8426
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Lus10030680 [exp]	12.8	0.8339

Compare expression of checked genes

Lus10005865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.