Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 1075 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 1066 / 0 FTSH7 FTSH protease 7 (.1) AT1G50250 377 / 3e-119 FTSH1 FTSH protease 1 (.1) AT5G42270 364 / 1e-114 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 363 / 2e-114 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 362 / 4e-114 FTSH8 FTSH protease 8 (.1) AT5G15250 349 / 7e-109 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 338 / 2e-103 FTSH10 FTSH protease 10 (.1) AT2G29080 334 / 4e-102 FTSH3 FTSH protease 3 (.1) AT5G53170 308 / 2e-92 FTSH11 FTSH protease 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001203 [exp] 1555 / 0 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 1219 / 0 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 1176 / 0 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 374 / 4e-121 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 375 / 2e-118 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 374 / 3e-118 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 364 / 1e-114 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 363 / 3e-113 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 335 / 2e-102 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043100 [exp] 1198 / 0 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.001G249100 [exp] 1165 / 0 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.005G249200 [exp] 377 / 1e-119 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 375 / 1e-118 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 366 / 5e-115 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 365 / 1e-114 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 349 / 3e-109 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 346 / 1e-106 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 337 / 4e-103 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.006G227700 [exp] 312 / 7e-95 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10005868 pacid=23176943 polypeptide=Lus10005868 locus=Lus10005868.g ID=Lus10005868.BGIv1.0 annot-version=v1.0 ATGTCGTCGATGATTGAAACTCTGAGGCCGGTTTCCCGGTTTCACTTAGACTCCAATTCTACTAGATATCGTTATCCTCCTCCTCACTGCCGCGGGTCTT CCCCGTTTCGCGCTCATTCCAGGGTTCCGCACCACCAGGATCCTCTACGGTTTCCTAGCCCGGTCAACCTTTCTAATGATTCCTCACCGTTTGCAGCTCT ACATGATTCTAATCTATGGGGAAGTGGTGGGGTTTGGTGGAGCAGTAGATTGAGAGAGGATAAATTATCGGCTAATTGTCAGGACGGGGATTCCACGGCC AGCTCCAGCGACGAAACAGACGGGCAACAAGCTAGCAGCAGCAGTACGAATACGCCGAGTGCGGGTCCTGAGCAGAGGAAGGAGAAACAAGGGAAAGGTG ACTGGTGTTGGTGGTCGAAACAGAAGAATTGGAAATGGCAGCCGCTAATTCAAGCTCAGGAGGTTGGGGTGTTGCTTTTACAATTGGGAATTGTTATGTT CGTCATGCGGCTGCTGCGGCCTGGGATTCCGTTACCGGGGTCGGAACCAAGGCCGCCGACAACTTTCGTTAGTGTACCGTACAGCGACTTCTTGAGCAAG ATTAATAGCAACAAGGTGCAGAAGGTTGAGGTTGATGGCGTGCACATAATGTTTAAGCTGAAGAACGAAAGGACCGGAAATCAGGAGAGTGCGGATGTGG TCGACGGTAGGTGGCAGGAGTCCGAGGGCTTGTTAAGGAGCATTGCGCCCACCACTAGGAGGATTGTGTTCACAACTACTAGACCCACCGATATCAAGAC TCCCTACGAGAAGATGCTTGAGAATCAAGTGGTTTTTGGATCGCCTGATAGGAGGTCTGGTGGTTTTTTCAACTCAGCTTTGATAGCTATGTTCTATGTG GCCGTGCTTGCTGGACTTCTCCATAGGTTCCCTGTTAGTTTTTCTCAGCATACACCTGGTCAGATGAGAAATCGCAAGTCTGGTGGTTCTGGAGGTACAA AAGTTTCTGAGCAAGGGGATACGATTACTTTTGCTGATGTTGCTGGCGTCGATGAGGCTAAGGAAGAATTAGAAGAAATTGTGGAATTTCTCAAGAATCC AGACAGGTACATAAAACTTGGGGCTCGTCCTCCTCGGGGTGTTCTGCTGGTTGGTCTTCCTGGTACAGGCAAGACTCTTCTAGCTAAGGCTGTTGCCGGA GAAGCTGAAGTCCCTTTCATTAGTTGTTCTGCTAGTGAGTTTGTAGAGTTGTACGTTGGAATGGGTGCCTCCCGTGTAAGAGATCTGTTTGCACGAGCAA AGAAGGAGGCACCTTCAATAATATTCATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGGAAGTTCCGCATAGTCAGTAATGATGAGCGTGAGCA AACTTTGAACCAGTTGCTCACTGAGATGGATGGATTTGATAGCAATTCTGCTGTGATTGTTCTTGGAGCAACAAATCGTTCAGATGTATTGGATCCTGCA CTTCGGAGACCTGGAAGATTTGACCGAGTAGTAACGGTGGAAGCACCTGATAGGAATGGGAGAGAGGCCATTTTGAAAGTGCATGCTTTCAAGAAGGAGC TACCTTTAGGCAAAGATGTCGACCTTTGTGGCATTGCTTCTATGACCACTGGATTCACTGGGGCTGATCTTGCAAATATAGTAAATGAAGCTGCTCTGTT GGCTGGAAGGAAAAGAAAAACAGTTGTAGAGAGAATAGACTTCATTCAGGCCGTGGAGAGGTCTATAGCTGGCATAGAGAAAAAGACAGCCAAGCTGCAA GGGAGTGAGAGGGCGGTTGTTGCACGTCATGAAGCTGGGCATGCAGTAGTAGGCACTGCTGTTGCTAGTCTCATTCCGGGACAGCCACGTGTGGAGAAAT TGAGCATTCTACCAAGGACGGGAGGTGCTTTGGGCTTTACTTATACTCCTCCAACAAATGAGGACAGGTATTTGCTTTTCATCGATGAGTTACGTGGCCG CTTGGTCACCCTTCTGGGAGGACGTGCAGCAGAAGAAGTAGTATACGCAGGTCGTGTATCTACCGGCGCACTAGATGATATTCGACGAGCTACAGACATG GCATACAAGGCCATAGCTGAATATGGTCTCAATCAAACTATCGGTCCTGTATCTGTCGGAACCCTTACTGGAGGGGGAATGGATGAATCTGGAGCTGGTC CCTGGGGAAGGGAGCAGGGTCATCTTGTTGATCTCGTTCAAAAGGAGGTAAAGCAATTGCTACAATCTGCACTAGACGTGGCACTCTGCGTTCTGCGTGC TAATCCTACTCTCTTGGAAGGGCTTGGTGCTCATCTGGAAGAGAATGAGAAAGTAGAGGGGGAAGAGCTACAAGAGTGGCTGAAATTGGTAGTTGCTCCA GAAGAGCTAACTTCATTCTTAAAAGGTAAGCAAGTATCCCTCCTCCCTCTCCCTGCACAGCCCGCATCAGCTTCATGA
AA sequence Show only first row Show all	>Lus10005868 pacid=23176943 polypeptide=Lus10005868 locus=Lus10005868.g ID=Lus10005868.BGIv1.0 annot-version=v1.0 MSSMIETLRPVSRFHLDSNSTRYRYPPPHCRGSSPFRAHSRVPHHQDPLRFPSPVNLSNDSSPFAALHDSNLWGSGGVWWSSRLREDKLSANCQDGDSTA SSSDETDGQQASSSSTNTPSAGPEQRKEKQGKGDWCWWSKQKNWKWQPLIQAQEVGVLLLQLGIVMFVMRLLRPGIPLPGSEPRPPTTFVSVPYSDFLSK INSNKVQKVEVDGVHIMFKLKNERTGNQESADVVDGRWQESEGLLRSIAPTTRRIVFTTTRPTDIKTPYEKMLENQVVFGSPDRRSGGFFNSALIAMFYV AVLAGLLHRFPVSFSQHTPGQMRNRKSGGSGGTKVSEQGDTITFADVAGVDEAKEELEEIVEFLKNPDRYIKLGARPPRGVLLVGLPGTGKTLLAKAVAG EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA LRRPGRFDRVVTVEAPDRNGREAILKVHAFKKELPLGKDVDLCGIASMTTGFTGADLANIVNEAALLAGRKRKTVVERIDFIQAVERSIAGIEKKTAKLQ GSERAVVARHEAGHAVVGTAVASLIPGQPRVEKLSILPRTGGALGFTYTPPTNEDRYLLFIDELRGRLVTLLGGRAAEEVVYAGRVSTGALDDIRRATDM AYKAIAEYGLNQTIGPVSVGTLTGGGMDESGAGPWGREQGHLVDLVQKEVKQLLQSALDVALCVLRANPTLLEGLGAHLEENEKVEGEELQEWLKLVVAP EELTSFLKGKQVSLLPLPAQPASAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	5.7	0.7936
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	8.7	0.7730
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	9.5	0.7872
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	10.2	0.7534
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	10.2	0.7606
AT2G46320			Mitochondrial substrate carrie...		Lus10012635 [exp]	12.7	0.7135
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	14.7	0.7546
AT4G27020			unknown protein		Lus10032644 [exp]	21.2	0.7398
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	23.2	0.7527
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	26.7	0.7555

Compare expression of checked genes

Lus10005868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.