Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46130 255 / 1e-85 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 254 / 2e-85 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT4G13480 166 / 2e-50 MYB ATMYB79 myb domain protein 79 (.1) AT3G24310 164 / 9e-50 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT3G53200 161 / 4e-49 MYB ATMYB27 myb domain protein 27 (.1) AT3G30210 161 / 2e-48 MYB ATMYB121 myb domain protein 121 (.1) AT1G68320 160 / 3e-48 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G27810 158 / 6e-48 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT1G25340 159 / 2e-47 MYB ATMYB116 myb domain protein 116 (.1.2) AT2G47190 158 / 2e-47 MYB AtMYB2 myb domain protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040861 [exp] 265 / 1e-90 AT3G46130 147 / 6e-45 myb domain protein 48 (.1.2.3.4) Lus10023711 [exp] 165 / 1e-49 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 163 / 6e-49 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10022259 [exp] 159 / 7e-48 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10023918 [exp] 158 / 9e-48 AT3G53200 172 / 1e-53 myb domain protein 27 (.1) Lus10009037 [exp] 157 / 2e-47 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10034372 [exp] 157 / 2e-47 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10041435 [exp] 160 / 3e-47 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 158 / 7e-47 AT1G68320 262 / 2e-86 myb domain protein 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235500 [exp] 305 / 2e-105 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.009G027300 [exp] 291 / 3e-100 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.010G064000 [exp] 167 / 3e-51 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.008G173400 [exp] 167 / 6e-51 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G115600 [exp] 159 / 1e-48 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.004G118000 [exp] 159 / 1e-48 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.017G071500 [exp] 155 / 2e-47 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.015G046200 [exp] 159 / 4e-47 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 159 / 4e-47 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.012G055600 [exp] 159 / 5e-47 AT1G68320 244 / 1e-79 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005886 pacid=23176908 polypeptide=Lus10005886 locus=Lus10005886.g ID=Lus10005886.BGIv1.0 annot-version=v1.0 ATGATTCAAGACGAAGTCCGAAAGGGTCCATGGACAGAGCAGGAGGACATCCTCCTGGTCAACTTTGTGCACTTGTTTGGAGATCGGCGATGGGATTTTA TAGCTAAAGTTTCAGGTTTGAACAGAACTGGAAAGAGTTGCAGGTTGCGTTGGGTTAACTATCTCCATCCCGGCCTCAAACGAGGCAAGATGACCCCTCA AGAAGAGAAGCTCGTCGTCGAGCTCCACGCCAAATGGGGCAACAGATGGTCGAGAATTGCTCGCAAGCTACCGGGGCGCACTGACAACGAAATCAAAAAC TACTGGAGGACTCATATGAGGAAGAAGGCACAAGAGAGGAAAAGGGCGGTATCGTCGTCGTCCTCTTCGAATAATTCCTCTGCCTCCAATACTACTACTG TGGACTCATCACCTTTCCAAGAGACTGGAGACCGTAGCTTCTACGACACTGGCGGGAACAACCAAGTGGTCGTAGCTGCTGCAGCTGGGAAAACTAACGA TTCGATGCAGGTAGGTGACAAAGGTTACTCGATGGACGACATATGGAAAGACATCGAGAACACGATCGAACCGGTCTCTTCTGCGGGTTTTAACGACAAT TTCTCTGGTCCTGCAATCCTCTCTCCGCCTTGGGAGTATAATTTTCATGACACGCTCTGGAAGCTGGATACACACTCTGGAAGCTGGACGAAGAGGAGAG TAAAGCGTTTCTTCCTTATGACTACGGAACCGTGTTTTTAA
AA sequence Show only first row Show all	>Lus10005886 pacid=23176908 polypeptide=Lus10005886 locus=Lus10005886.g ID=Lus10005886.BGIv1.0 annot-version=v1.0 MIQDEVRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEEKLVVELHAKWGNRWSRIARKLPGRTDNEIKN YWRTHMRKKAQERKRAVSSSSSSNNSSASNTTTVDSSPFQETGDRSFYDTGGNNQVVVAAAAGKTNDSMQVGDKGYSMDDIWKDIENTIEPVSSAGFNDN FSGPAILSPPWEYNFHDTLWKLDTHSGSWTKRRVKRFFLMTTEPCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	3.0	0.9676
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	4.1	0.9728
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	5.7	0.9638
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	6.2	0.9572
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	6.6	0.9711
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	8.4	0.9643
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	8.8	0.9613
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	9.8	0.9669
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	10.4	0.9421
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	10.5	0.9660

Compare expression of checked genes

Lus10005886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.