Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03140 158 / 5e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 134 / 7e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 129 / 4e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 103 / 5e-27 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 96 / 2e-24 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 88 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 87 / 2e-21 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 85 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 80 / 2e-18 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 78 / 6e-18 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040909 [exp] 228 / 3e-77 AT4G03140 246 / 1e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 149 / 4e-44 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 145 / 2e-43 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 105 / 9e-28 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 105 / 1e-27 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 100 / 4e-26 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 100 / 8e-26 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 100 / 9e-26 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 94 / 1e-23 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135510 [exp] 174 / 1e-54 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 149 / 6e-45 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 142 / 2e-42 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 112 / 2e-30 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 109 / 2e-29 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 107 / 2e-28 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 102 / 3e-27 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 100 / 3e-26 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 96 / 1e-24 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 96 / 2e-24 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10005927 pacid=23146061 polypeptide=Lus10005927 locus=Lus10005927.g ID=Lus10005927.BGIv1.0 annot-version=v1.0 ATGTCGATAAACGTTAAGGGAGTGGTGGCCGGAGTGAAGCACGCGGCCCGAGTTATGGTCCCGAGTGGTACCGGGGGGTCGATACTGTGCACGGGGAGCG TGACGGGGATCATGGGAGGGATGGCTCAGCATACTTACTCGATTTCCAAGGCTGCGGTTATAGCGGTCGTGAAATCTGCTGCAGCGGAGATGTGCCAGTA TGGGGTGAGGGTGAACTGCATTTCGCCGTTCGTTGTCCCTACCGGGTTTGTGATGGAGGAGCTGGAAGGGATTTACAACGTGGCGGATCGGGAGAGGCTC GTGGAGATGGTGTGTGGGTTGGGATGTTTGAAAGGTGGCCGGTGTGAGGCTGATGATATAGCTAATGCAGCAGTGTTTCTTGCTTCAGATGATGCCAAGT ATGTTAGTGGACATAACCTGGTTGTGGATGGTGGGTTTACTTCCTTTAAGAACTTGGGTTTGCCTCCCAGAGATCAGTTTATGTAG
AA sequence Show only first row Show all	>Lus10005927 pacid=23146061 polypeptide=Lus10005927 locus=Lus10005927.g ID=Lus10005927.BGIv1.0 annot-version=v1.0 MSINVKGVVAGVKHAARVMVPSGTGGSILCTGSVTGIMGGMAQHTYSISKAAVIAVVKSAAAEMCQYGVRVNCISPFVVPTGFVMEELEGIYNVADRERL VEMVCGLGCLKGGRCEADDIANAAVFLASDDAKYVSGHNLVVDGGFTSFKNLGLPPRDQFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	3.5	0.8612
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	3.7	0.8251
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	5.2	0.8236
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	7.6	0.7605
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	7.7	0.7924
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	8.5	0.7957
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	8.7	0.7833
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	10.9	0.8156
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10019773 [exp]	12.3	0.7111
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	12.5	0.8203

Compare expression of checked genes

Lus10005927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.