Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01250 131 / 2e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 105 / 3e-28 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 101 / 2e-26 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 96 / 2e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 97 / 4e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 96 / 5e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 94 / 5e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 93 / 2e-23 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT1G71450 92 / 3e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 92 / 4e-23 AP2_ERF ATERF38 ERF family protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030242 [exp] 157 / 1e-49 AT1G01250 76 / 5e-18 Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 100 / 4e-27 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 102 / 6e-27 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 101 / 2e-26 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10023873 [exp] 100 / 2e-26 AT2G36450 121 / 3e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 100 / 4e-26 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10034949 [exp] 97 / 4e-24 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 92 / 9e-23 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 91 / 9e-23 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172200 [exp] 137 / 5e-41 AT1G01250 177 / 6e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.014G099900 [exp] 133 / 3e-39 AT1G01250 191 / 4e-62 Integrase-type DNA-binding superfamily protein (.1) Potri.002G172300 [exp] 127 / 3e-37 AT1G01250 177 / 6e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 105 / 7e-28 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 102 / 6e-27 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 102 / 2e-26 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 100 / 3e-26 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 100 / 4e-26 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 99 / 2e-25 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 97 / 2e-25 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10005967 pacid=23175079 polypeptide=Lus10005967 locus=Lus10005967.g ID=Lus10005967.BGIv1.0 annot-version=v1.0 ATGACGGAGCAGCAACCACCATACACCACCACCACACACGATAATTACACTTCCCCCTCCCCGCCTCCGCCGCCGCACAAGCCCACACGCCCCCCCCCCT ATCACACGTCCCTCCGTATCGACCTGCTCCGGAGGGGCCGGTGGGGGAAGTGGGTATCAGAAATCCGGGAGCCCAAAAAAAAGACCCGAATCTGGCTGGG CTCGTTCCCCGTACCCGAAATGGCCGCCAAGGCCTACGACGTCGCAGCACACTGCCTTAAAGGACGCAACGCCATCCTCAACTTCCCCGACCAGGTCAAC GACTTACCCACTCCTTCCACGTGTCGCTCTCCGAGGGACATCCAGGCCGCCGCCGCCTTAGCTGCACGCTCCGTTATTATCCGTCATCATTCCTCCTCTT CCTCGCCCAGCTCCTCGCCGTTAAGTGACGGCGCTGGGGTTAATGGAGTTGGGAGGAGTGATGATGAGGATGATGATGGTGACGGCGGGTTTTGGGAGGA GATTGAGTTGCCAGAATTGCTCATTACCAGTAGTAGTAGCTATGGTGAGCTGTGGAGCTTGGAAGCCGGCGGGAAGGATTCGGCGGCGGATTGGTAG
AA sequence Show only first row Show all	>Lus10005967 pacid=23175079 polypeptide=Lus10005967 locus=Lus10005967.g ID=Lus10005967.BGIv1.0 annot-version=v1.0 MTEQQPPYTTTTHDNYTSPSPPPPPHKPTRPPPYHTSLRIDLLRRGRWGKWVSEIREPKKKTRIWLGSFPVPEMAAKAYDVAAHCLKGRNAILNFPDQVN DLPTPSTCRSPRDIQAAAALAARSVIIRHHSSSSSPSSSPLSDGAGVNGVGRSDDEDDDGDGGFWEEIELPELLITSSSSYGELWSLEAGGKDSAADW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005967 [exp]	0	1
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	2.4	0.8665
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10018229 [exp]	2.8	0.8689
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	11.1	0.7954
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	13.9	0.7889
AT3G50685			unknown protein		Lus10014321 [exp]	18.8	0.7822
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	30.7	0.7905
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	35.3	0.7728
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10010895 [exp]	37.8	0.7045
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	39.1	0.7852
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	41.6	0.6915

Compare expression of checked genes

Lus10005967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.