Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46570 749 / 0 LAC6 laccase 6 (.1) AT5G05390 521 / 0 LAC12 laccase 12 (.1) AT2G40370 510 / 1e-176 LAC5 laccase 5 (.1) AT5G60020 485 / 5e-167 LAC17, ATLAC17 laccase 17 (.1) AT2G30210 483 / 3e-166 LAC3 laccase 3 (.1) AT2G38080 482 / 6e-166 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 482 / 6e-166 LAC11 laccase 11 (.1) AT5G01190 477 / 5e-164 LAC10 laccase 10 (.1) AT1G18140 476 / 4e-163 LAC1, ATLAC1 laccase 1 (.1) AT5G07130 468 / 3e-160 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030235 [exp] 1046 / 0 AT2G46570 802 / 0.0 laccase 6 (.1) Lus10017175 [exp] 496 / 5e-172 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017427 [exp] 491 / 2e-169 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10035546 [exp] 489 / 2e-168 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10034614 [exp] 486 / 1e-167 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10027782 [exp] 485 / 2e-167 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034439 [exp] 485 / 6e-167 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10035517 [exp] 485 / 6e-167 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027747 [exp] 484 / 1e-166 AT3G09220 707 / 0.0 laccase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100600 [exp] 913 / 0 AT2G46570 831 / 0.0 laccase 6 (.1) Potri.010G183500 [exp] 510 / 1e-176 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.010G183600 [exp] 508 / 4e-176 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073800 [exp] 508 / 1e-175 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.008G073700 [exp] 507 / 2e-175 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.016G112000 [exp] 504 / 1e-174 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 501 / 2e-173 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 498 / 4e-172 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G094100 [exp] 495 / 3e-171 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G096900 [exp] 495 / 5e-171 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10005976 pacid=23175080 polypeptide=Lus10005976 locus=Lus10005976.g ID=Lus10005976.BGIv1.0 annot-version=v1.0 ATGAGGGTGAACAAACTATGTAGCTCGAACGAGATCGTCACGGTCAACAACATGCTCCCAGGTCCTGTTGTCTATGCTGAAGAAGGCGACCGGTTGATCA TTAAAGTCGTGAACTTGTCTCCCTACAATGCCACCATCCACTGGCATGGTGTAAGGCAGATACTATCTTGTTGGTCTGACGGGCCTTCGTACATAACTCA GTGTCCGATAATTCCGGGGCAGAGCTTCACCTATGAGTTCACAATGGTAAAACAAAAGGGAACCTTCTTTTGGCATGCACATGTGTCTTGGCTCAGGGCC ACTGTTTATGGTGCCCTTATAGTGTATCCAAAGCCAGGGATACCTTATCCTTTTCCATTTCCATACGAAGAGCACATCATAATCCTAGGGGAATACTGGA ACCAAGATATAGTGCAACTCGAACGTCGAGTCGTAGCCAGCGGAGGAGGTGCCCCGCCGGCTGATGCATATACCATCAATGGTCACCCTGGCCCCAACTA CAATTGCTCTGCCAATGATGTATACAAGCTGGACGCCGTCCCAGGGAGGACATACTTACTAAGACTGATAAACGCAGGCTTAAACACAGAAAACTTCTTC GCCATCGCCAACCACAAACTAACAATAGTAGAAGCAGATGCAGAGTACACAAAGCCATTCGCCACAGACCGTGTGATGCTCGGACCGGGCCAGACACTGA TCGTCCTCGTCAAGGCCGACCAGCCCATCGGAAAATATTCCATGGCCGTCGGACCATACATCTCGGCCCAAAATCTTCCCTTTCAAAACATAACATCGGT AGCCTACTTCCAGTACTCTGGAGCTACGCCCAACAGCTTATCACTGCCGGCCAGGCAACTGCCAAACGCCAACGATAATTTCGCGGTGAAGACGGTGATG GACGGTCTGAAAGGGCTCAACACGACGGATTCTGTCCCCAAGGAGATCGACACAACTCTTTTCGTCACCATTGGGTTGAACATCAATAAATGCAGCTCCA AAACACCACAAACAAACTGCCAGGGTTTTAGAAATGGAACCATGGCGGCTTCGATGAACAATATTAGTTTCGTTAAGCCTACGGTTTCGCTTTTGGAAGC TTACTACAAGGGGATTGAAGATTATTTCACCCACGACTTTCCAGCTGCGCCGCTAAAGTTTTACGACTTTGTGAACGGAGCGCCTAACAATCCACCTAAC GACACAAGCTCGATGAACGGGACTAGAACCAAGGTGATTGAGTACGGAGCCAGGGTGCAAATGATCTTGCAGGATACCGGGACAATTTCGACTGAGAATC ATCCGATTCATCTTCATGGCTATAGTTTCTATGTTGTGGGATATGGGAATGGAAACTACAATCCTCAAACGGCTAACCTCAATTTGTTCGATCCGCCGTA CATGAACACGATTGGAGTTCCGGTAGGCGGCTGGGCTGCTATCAGATTCAAGGCCGATAATCCAGGAGTTTGGTTCATCCATTGTCACTTTGATGTGCAT CAATCATGGGGATTAGCTACAGCTCTGATAGTTAAGAATGGGGTTGGCCACTTAGAGACACTTCCCCATCCTCCTGCAGATCTCCCTCGCTGCTAG
AA sequence Show only first row Show all	>Lus10005976 pacid=23175080 polypeptide=Lus10005976 locus=Lus10005976.g ID=Lus10005976.BGIv1.0 annot-version=v1.0 MRVNKLCSSNEIVTVNNMLPGPVVYAEEGDRLIIKVVNLSPYNATIHWHGVRQILSCWSDGPSYITQCPIIPGQSFTYEFTMVKQKGTFFWHAHVSWLRA TVYGALIVYPKPGIPYPFPFPYEEHIIILGEYWNQDIVQLERRVVASGGGAPPADAYTINGHPGPNYNCSANDVYKLDAVPGRTYLLRLINAGLNTENFF AIANHKLTIVEADAEYTKPFATDRVMLGPGQTLIVLVKADQPIGKYSMAVGPYISAQNLPFQNITSVAYFQYSGATPNSLSLPARQLPNANDNFAVKTVM DGLKGLNTTDSVPKEIDTTLFVTIGLNINKCSSKTPQTNCQGFRNGTMAASMNNISFVKPTVSLLEAYYKGIEDYFTHDFPAAPLKFYDFVNGAPNNPPN DTSSMNGTRTKVIEYGARVQMILQDTGTISTENHPIHLHGYSFYVVGYGNGNYNPQTANLNLFDPPYMNTIGVPVGGWAAIRFKADNPGVWFIHCHFDVH QSWGLATALIVKNGVGHLETLPHPPADLPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	0	1
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	2.4	0.8195
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	2.4	0.8522
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	4.6	0.8253
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	8.1	0.8483
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	9.4	0.8252
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	9.8	0.7857
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	13.5	0.7807
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	15.3	0.8198
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	20.0	0.7985
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	20.8	0.7432

Compare expression of checked genes

Lus10005976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.