Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 588 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 260 / 1e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 255 / 7e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 254 / 2e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 243 / 5e-74 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT5G17760 239 / 5e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 236 / 7e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 236 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28610 234 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 234 / 5e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030220 [exp] 949 / 0 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008834 [exp] 499 / 8e-174 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035073 [exp] 395 / 3e-136 AT2G46620 280 / 7e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 388 / 1e-132 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 260 / 7e-81 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 250 / 2e-78 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 252 / 2e-77 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 245 / 8e-75 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 241 / 2e-73 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102300 [exp] 656 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 653 / 0 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 547 / 0 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 535 / 0 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 307 / 1e-98 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 304 / 1e-97 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 258 / 8e-80 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 256 / 5e-79 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 246 / 2e-75 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 241 / 3e-74 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10005991 pacid=23175056 polypeptide=Lus10005991 locus=Lus10005991.g ID=Lus10005991.BGIv1.0 annot-version=v1.0 ATGAAGAATATTATGCACTGTTTCCTTGCGGCGTCCGCTGCTGTTGCTCTGTTTTACCTCCTCCGTGTGGCTCTGTTCAAGACCGGACTGATTTTTCTAA CGAAGAAGTGGTGGAGAGTCGTGGTGGATCGCCTCCATGTCTACCAGTACTTCAAGGTTCCGGAATTCAGCGCCAAGGAGAACGAGCTTTACCGGAGAGT TACTCTGTACCTGAATTCTCTCGAATCCATGGAGGATTCTGATTTCACCAATCTGTTTACAGGAAGAACCTCCAGCGATATCGTCCTCCGCCTCGATCCT AATCAGGTGATTGATGACTGTTTTCTCGGAGCGAGGGTTTCCTGGATTAACGGCGATGACGGTGGCGGAGGTGGTAGGACTTTGGTTTTGAAGGTTAGGA GAGCTGACAAGCGGCGAATTCTCCGGCCTTATCTTCAGCATATCCACACCGTCTCTGATGAGCTTGACGAGAGGAAGAAGGATTTGAAACTCTACATGAA TGTAATCGAGAGACTCGGCGGCGGCGGCAGTACAGATGATTCGAAAACTAGACGGTGCTGGAGTTTCGTCCCGTTCACTCATCCGTCGACGTTCGATACG ATTGCGATGGAATCAGATCTGAAAAGCAAGCTGAAGTCAGATCTGGAGTCGTTCCTCAGAGCCAAACAGTACTACCACCGCCTCGGCCGCGTTTGGAAGC GGAGCTACCTATTGTACGGACCGTCAGGCACCGGCAAATCCAGCTTCGTCGCTGCCATGGCGAACTTCCTGAGATACGACGTCTACGAGATCGACCTCTC CAGAGTCAGGGACGATTCGGATCTGAAGGCAATCCTGCTTCAAACGACGAGCAGGTCGGTGATCGTGATCGAGGATCTCGATCGGTTTCTGATGGAGAAA TCAAAAGATTCAAAACCATCCGCAGTGTCCTTGGCCGGTATGCTGAATTTCATGGACGGAGTTCTCAGCTCCTGCGCCGCGGAGGAGAGGATCATGGTAT TCACGATGAACACCAAGGACGGAATTGAACCGGCTATTCTCCGACCGGGTCGGATCGACGTCCACATCCATTTCCCGCTCTGCGACTTCTCGTCGTTCAA GACTCTTGCGAGCAACTACTTAGGGTTAAAGGATCACAAGTTGTTCCCTCAAGTGGAGGAGATTTTCCAATCGGGAGCCAGCTTGAGCCCGGCAGAAATC GGAGAACTCATGATCGCTAATCGGAGTTCTCCGAGCCGGGCTCTAAAGTTGGTCATCACCGCCCTACAAAGTGAGGGTGACCGGAGAGGGTCGTTGAATA TAGGAATGTCAATGGGGTCGGGTCAAGAAGATAATCAGTGCGAACATTCGGGAATTTTCGGCAGGGAAGGGGCGGTGAATCCGATTAAGGACATTAGGAA ACTGTACGGGTTGTTGAAGATGAAAAGCAGCCGGAAATCGGAGTCTTTCGAGGTGAAGGGCGATTCGTCGGGAGTTATCGGAACCGGTGATCGGAGTTAG
AA sequence Show only first row Show all	>Lus10005991 pacid=23175056 polypeptide=Lus10005991 locus=Lus10005991.g ID=Lus10005991.BGIv1.0 annot-version=v1.0 MKNIMHCFLAASAAVALFYLLRVALFKTGLIFLTKKWWRVVVDRLHVYQYFKVPEFSAKENELYRRVTLYLNSLESMEDSDFTNLFTGRTSSDIVLRLDP NQVIDDCFLGARVSWINGDDGGGGGRTLVLKVRRADKRRILRPYLQHIHTVSDELDERKKDLKLYMNVIERLGGGGSTDDSKTRRCWSFVPFTHPSTFDT IAMESDLKSKLKSDLESFLRAKQYYHRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLRYDVYEIDLSRVRDDSDLKAILLQTTSRSVIVIEDLDRFLMEK SKDSKPSAVSLAGMLNFMDGVLSSCAAEERIMVFTMNTKDGIEPAILRPGRIDVHIHFPLCDFSSFKTLASNYLGLKDHKLFPQVEEIFQSGASLSPAEI GELMIANRSSPSRALKLVITALQSEGDRRGSLNIGMSMGSGQEDNQCEHSGIFGREGAVNPIKDIRKLYGLLKMKSSRKSESFEVKGDSSGVIGTGDRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	0	1
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	1.4	0.8689
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	3.0	0.8701
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	4.2	0.8571
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	4.9	0.8363
					Lus10031757 [exp]	5.8	0.8133
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	6.7	0.8509
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	8.8	0.8405
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	8.9	0.8151
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	8.9	0.8344
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	9.2	0.8553

Compare expression of checked genes

Lus10005991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.