Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58360 123 / 2e-32 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 121 / 1e-31 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G09220 120 / 3e-31 AAP2 amino acid permease 2 (.1) AT5G49630 120 / 3e-31 AAP6 amino acid permease 6 (.1) AT1G77380 119 / 7e-31 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 117 / 2e-30 AAP4 amino acid permease 4 (.1) AT1G44100 111 / 6e-28 AAP5 amino acid permease 5 (.1) AT5G23810 90 / 7e-21 AAP7 amino acid permease 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 132 / 1e-35 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 126 / 2e-33 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 124 / 7e-33 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 124 / 1e-32 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 123 / 3e-32 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042741 [exp] 122 / 3e-32 AT1G77380 515 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 122 / 4e-32 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042740 [exp] 121 / 1e-31 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 120 / 4e-31 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236000 [exp] 158 / 2e-45 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.005G068900 [exp] 124 / 1e-32 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 123 / 2e-32 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 123 / 3e-32 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G181600 [exp] 119 / 1e-30 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 119 / 1e-30 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079700 [exp] 116 / 9e-30 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 115 / 1e-29 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 114 / 3e-29 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 113 / 2e-28 AT1G77380 751 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10006026 pacid=23146576 polypeptide=Lus10006026 locus=Lus10006026.g ID=Lus10006026.BGIv1.0 annot-version=v1.0 ATGTGTCCTGTAAACGGAGGGGGAGAAGTGGCTACCGCAGCAGCCTCTGATCACCAGGTGGAGCAGTTGAGCAATGATGTAGTGCTGCATCCAGCAGAAG AAGTTGACGACGACGGCAAGCCCAAAAGAAATGTGTTGAAGACTAACTACAACTCTCTCTACGACATCTACGTCTCCTCCTTGATGTGCGGCAGCAGCAG CAGCTCCCACCACCACGGCTACATTCTCGAAATAAGTGTTGCTATTACAGGAACAGTGTGGCGGCAGCGCACACATAATAACAGCAATAATAGGGTCAGG GGTTCTGTCACTTGCCTGGGGGATCGCCCAGTTAGGATGGATAGCCGGACCGGCAACTCTGTTAATATTCTCTTCCATCACATATTACACCTCCCGCCTT CTGCCGACTGTTACCGCCACCTCTCCACTGGTAAGCGAAACTACACCTACATGGAAGCTGTGAATGCTTACTCAGGTAAAAGGATGGAGTTTGCTTGCGG TGTTGTCCAATGCGTGATGCTGTGTGGCGCCACCATCGGCTATGCCATTACAGCATCAATGAGCATGCTGGCAATAAGGAAGTCGGACTGCTTACATAAA AATAAAGGATATGGTGATAATCTGGCATGCAAATTCTCGACAAACCCGTACCTGATAGGGATGGGGATTGTAGAAGTAGTGGTCTCTCAGATCCCCAACT TCCACAAGCTAGCATGGCTCTCAATTGTGGCTGCTATCATGTCTTCCCTCCGGTAA
AA sequence Show only first row Show all	>Lus10006026 pacid=23146576 polypeptide=Lus10006026 locus=Lus10006026.g ID=Lus10006026.BGIv1.0 annot-version=v1.0 MCPVNGGGEVATAAASDHQVEQLSNDVVLHPAEEVDDDGKPKRNVLKTNYNSLYDIYVSSLMCGSSSSSHHHGYILEISVAITGTVWRQRTHNNSNNRVR GSVTCLGDRPVRMDSRTGNSVNILFHHILHLPPSADCYRHLSTGKRNYTYMEAVNAYSGKRMEFACGVVQCVMLCGATIGYAITASMSMLAIRKSDCLHK NKGYGDNLACKFSTNPYLIGMGIVEVVVSQIPNFHKLAWLSIVAAIMSSLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10006026 [exp]	0	1
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10032093 [exp]	8.0	0.6562
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	10.1	0.7290
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10016232 [exp]	17.2	0.6820
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	20.1	0.7200
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	39.5	0.6516
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	64.3	0.6438
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	70.4	0.6271
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	74.6	0.6340
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	77.4	0.6208
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	101.7	0.5917

Compare expression of checked genes

Lus10006026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.