Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49630 68 / 9e-15 AAP6 amino acid permease 6 (.1) AT1G44100 66 / 4e-14 AAP5 amino acid permease 5 (.1) AT1G58360 66 / 7e-14 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G77380 63 / 6e-13 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G10010 63 / 7e-13 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G09220 60 / 8e-12 AAP2 amino acid permease 2 (.1) AT5G63850 57 / 6e-11 AAP4 amino acid permease 4 (.1) AT5G23810 52 / 3e-09 AAP7 amino acid permease 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029702 [exp] 64 / 5e-13 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 63 / 6e-13 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 63 / 7e-13 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10007235 [exp] 62 / 2e-12 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10028236 [exp] 61 / 3e-12 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10036777 [exp] 59 / 2e-11 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 59 / 2e-11 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 57 / 6e-11 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 57 / 9e-11 AT1G77380 702 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236000 [exp] 71 / 8e-16 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.006G236100 [exp] 66 / 1e-14 AT5G49630 107 / 1e-27 amino acid permease 6 (.1) Potri.002G112100 [exp] 66 / 9e-14 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G181600 [exp] 62 / 1e-12 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 62 / 1e-12 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 62 / 2e-12 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 61 / 3e-12 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G079400 [exp] 61 / 3e-12 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 61 / 4e-12 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 61 / 4e-12 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10006027 pacid=23146570 polypeptide=Lus10006027 locus=Lus10006027.g ID=Lus10006027.BGIv1.0 annot-version=v1.0 ATGAGGTTAGTTGGAAGGACGTCGTTAGTATTAGCAGCAACTGTGGTGGCAATGGCTGTACCGTTTTTCAATGACGTCCTGGCACTTCTGGGAGCCATCT CGTACTGGCCTTTGACCGTGTATTTCCCGGTGGAGATGCACATTGCGCAGAGCAACCTGATTAAGAAGAGCAGTGGCCTTGGCCGCAAAATGGGTAGTAC TGCAGCTTCTGAATGTGTTGTGCTTAGTGGTGGCTATTGCAGCAGCTTGTGGTGGCATCCATGGTCTCTGTACTTCTCTTATAATGAAGTGTCACAATAA
AA sequence Show only first row Show all	>Lus10006027 pacid=23146570 polypeptide=Lus10006027 locus=Lus10006027.g ID=Lus10006027.BGIv1.0 annot-version=v1.0 MRLVGRTSLVLAATVVAMAVPFFNDVLALLGAISYWPLTVYFPVEMHIAQSNLIKKSSGLGRKMGSTAASECVVLSGGYCSSLWWHPWSLYFSYNEVSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10006027 [exp]	0	1
					Lus10015042 [exp]	16.7	0.5855
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	22.1	0.6344
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	23.0	0.6262
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	48.5	0.5963
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10000610 [exp]	56.2	0.5248
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	63.6	0.5789
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10020899 [exp]	81.2	0.5181
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	102.5	0.5263
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004611 [exp]	109.5	0.5022
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10001112 [exp]	115.9	0.4523

Compare expression of checked genes

Lus10006027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.